Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0119600

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 89 288 3.4E-46
FunFam G3DSA:3.40.190.290:FF:000001 Transcriptional regulator, LysR family - - 89 288 6.1E-69
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 5 112 4.25E-23
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 90 292 3.08E-48
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 11 64 2.7E-21
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 3 86 4.4E-25
CDD cd08470 PBP2_CrgA_like_1 - - 93 289 2.36548E-121
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 5 289 3.1E-84
Gene3D G3DSA:3.40.190.290 - - - 91 287 5.4E-67
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 5 90 2.6E-24

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.