Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0118465
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva DSM 17004 H619DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGTACCAACCGCGACCTGCCGCTGGCGTTAACCGTCGATGACATCAATGTGACTTCCGAGGTCACACCACCCTTGGCCACCTATACCAACCTGCGTCCTC CCACCCGCCCCTACCGGCCGGTACTGGACGGCCAGTTGCAGTGGGCCCTGATCTCCAACATGTCGCTCAATTACCTGTCGCTGCTATCGGCCGAACCGCT GAAAGCGGTCATCAATGCCTATGACTTTGCCGCCCTGCATGACATCCAGCAAACCCGCACCACCCGTAAACGCCTCGATGGCATTCGGGATATTCAAACC GAGCCTTTGGATTGGTTGATCAAGGGCCAACCCATTCGCGGGTTGCGTACACGGCTGGAGCTGGATCAAGGCGCATTCCTCTGCGAAGGCGACCTGTACC TGTTCGGTTGCGTACTGGCGCACTTCTTTGCCCTGTACGCCAGCATCAACGCCTTCCACCAACTGGAAGTGATCAACACCACCAACAACGAGCGCTACAC
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| DNA Sequence for Gene |
>H619_RS0118465
ATGGCCCATCCAGACCGGCAAACAACCGCTGTTCTAGCCGACCAGCTGCTCGCCGAGGCACACCAGTACAACTTCTTCCAGTTGCTGGAGCGCCTGCACG GCTTGCACGGGGATGACCTGGAACCACGCTGGCCTGCCCCGGCCACACGGCTGCGCGTACGGCTTGCCAGCGACCCGCGCCTGACCTTTCCCGTGTCCGA CGTCTACAAGGCCGAACGCATGCCTGAAACAGAAGACCGCTATCGCGTGTGCACCACATTCATGGGGCTGCACGGCACAGACTCGCCCTTGCCCACCTAT TACCTGGAAGAAGTGTCGTACGAGCATGCCCATGGCATCGGTGTGCGGCCGGCCTTCTTTGACTTTTTCAATCACTACCTGCTCAGCCTGTTGCACCGCA TCTGGCGCAAGTACCGCTATTACATCCGCTTCCAGCCGGGCGCGACCGACGGCTTCTCGCAGTACCTCTTTGCCCTGCTCGGCCTGAATGACAAACAACT GCGCGGCGACACCCCGCTGCCCTGGAGCCGCCTGCTCAGCTTCGCCGGGGTAATTGCCAGCCGCAGCCGAGCGCCGGGTACCGTTGCCGGCATCATCGCC CACTGTTTCGACTTGCAGCAGGTGCACATCCGCGAGTTCGAGACCCGCTTGGTTCCCACCACGGCCAGACAGCTGGTGAGCCTGGGCCGCCGCAATGGCC AGTTGGGCAGCTCCTTCATGGTCGGCAGCCGCACGCGAACCCGCAGCAGCAAGTTCACCATCGTGATCAGCGAACTCGACCAGGAGCAGTTGCGGGACCT GTTGCCCAGCGGCATCAACTTCAATCGCTTGCGTGCACTGATCGATTTCCTGTTGCGTGACGGGCTGGCCTACGACCTGGAGCTGCGCCTAAAGCAGAAC GCGCTGTCGCCCTTCTGCCTGCACCGTAGCCGAGGCGCCTACCTGGGCTGGACCAGCTTTGTCGATGACCGTCACGGCCAGATCAGCCCTGTCGTGCGGT TCCGGGGGCGCTCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACATTGACCTTGAGCATCACCAACCTTGATCAGTTGCAACACAACGTCACTGCCCGACATCAGTTTGACCGCACGGGCGGCACTCTCGGCAGCGCAGG GGCCACCTGGCGGATCAACGATCGTGAGCAGACCATTGCACCGATCCATTGCGAGATTCGCTGGATCGAGGGCAGCTTCTGCGTGATTGACCGTTGCCAC CGTACCTACCTGAATGACAGCCACGACAGCTTGGGAGCGCTCGCCCCCCGGCGGCTGCTGGAAGGTGACCAACTGCGCGTTGGCGCCTATCGCCTGCAAG TTCAATTTACACGGGCCGATGCACGCTCGGTGGAGGACCTGTTCAGGCCTGAACAGCACACCCTTGATCACTGGCTACTGGAGGCTCCAGCCAACCCTTG GCAACCCACTTCAGGCGCCAAGCACGTTGTCGCAGACATCTGCACAGCCTTCGCGCCAGGTATCGGCAACGATCCCTTGGCAGCACTGGACACCGCGACA
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| Amino Acid Sequence |
>type VI secretion protein
MAHPDRQTTAVLADQLLAEAHQYNFFQLLERLHGLHGDDLEPRWPAPATRLRVRLASDPRLTFPVSDVYKAERMPETEDRYRVCTTFMGLHGTDSPLPTY YLEEVSYEHAHGIGVRPAFFDFFNHYLLSLLHRIWRKYRYYIRFQPGATDGFSQYLFALLGLNDKQLRGDTPLPWSRLLSFAGVIASRSRAPGTVAGIIA HCFDLQQVHIREFETRLVPTTARQLVSLGRRNGQLGSSFMVGSRTRTRSSKFTIVISELDQEQLRDLLPSGINFNRLRALIDFLLRDGLAYDLELRLKQN ALSPFCLHRSRGAYLGWTSFVDDRHGQISPVVRFRGRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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