Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0117885
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva DSM 17004 H619DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGACCTCAACCTGGCCACCGGCGAAGACATTCCGCTGGAAGAGCGCGAGGCCGGTGAGCTGCTGGATTACGCCGGTACCCGGGTTGCGCCGGATGTCGAG GTGTTCAACCCGGTGTTCGACGTGACCCCGGCAGACCTGATCGACGTGATCGTGACCGAACGGGGCATCATCGAGCGCCCGGACACCGCCAAGCTGGCGC AACTGATGTGTCGCAAGCGGTTGCACTGATTCGGCCCTAAGCAACTGCAGCGCTCGAACTCTCCGGCGCTGCACATTCACCGGCAAGCCCCCGGTGCACA TCTCCCCACTACCCCCGCCATTGTGGTAACATCCGGCAGTTTCCAAGCCCGCCCATACCGGCGGTCTTCACTGCGCAGATCCATGGCACAACTCGTTGAT TTGTCGTAAGTCGTCGCATGCTGATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTC
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| DNA Sequence for Gene |
>H619_RS0117885
ATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAACTGAGACAGTCTTACCTCGACTACGCGATGAGCGTGATTGTCGGGCGAGCGC TGCCCGATGCGCGTGACGGCTTGAAGCCCGTGCATCGTCGCGTTCTCTTTGCGATGAGCGAACTGGGCAACGACTGGAACAAGCCGTACAAGAAATCCGC CCGCGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGCTGCGCTAC CTGCTGGTCGACGGCCAGGGCAACTTCGGTTCCGTGGACGGCGACAACGCCGCTGCCATGCGATACACCGAAGTGCGTATGGCCAAGCTGGCCCACGAGC TGCTGGCCGACCTGCACAAAGAAACCGTCGACTGGGTGCCCAACTACGACGGCACCGAGCAGATCCCGGCGGTGATGCCCACCCGTATCCCCAACCTGCT GGTCAACGGTTCCAGCGGTATCGCCGTGGGCATGGCCACCAACATTCCGCCGCATAACCTGGGCGAGGTCATCGACGGCTGCCTGGCGCTCATCGACAAC CCCGAAGTCACCATCGATGAGCTGATGCAGCACATTCCGGGCCCGGACTTCCCAACGGCCGGCCTGATCAACGGCCGCCAGGGCATCATCGAGGCCTACC GTACCGGCCGTGGTCGCATCTACATGCGCGCCCGCTCCGAAATCGAAGACATCGACAAGGTAGGCGGCCGCCAGCAGATCGTCGTGACCGAACTGCCTTA CCAGCTCAACAAGGCCCGCCTGATCGAGAAAATCGCCGAGCTGGTCAAAGAGAAAAAGATCGAAGGCATCACCGAGCTGCGCGACGAGTCCGACAAGGAC GGCATGCGCATCGTCATCGAGCTGCGTCGCGGCGAGGTGCCGGAGGTGGTGCTCAACAACCTGTATTCGCAAACCCAGCTGCAGAGCGTGTTCGGCATCA ACGTGGTGGCGCTGGTCGACGGCCGCCCGCGCTTGCTCAACCTCAAGGACCTGCTCGAAGCCTTCGTGCGCCACCGCCGTGAGGTGGTCACCCGCCGCAC CGTGTTCGAGCTGCGCAAGGCCCGCGAGCGCGGCCATATCCTTGAAGGCCAGGCGGTTGCGCTGTCCAACATCGACCCGGTCATTGCCCTGATCAAGGCC TCGCCAACGCCGTCCGAAGCCAAGGAAGCGCTGATTTCCACGCCATGGGAATCCAGTGCCGTGCAGGTGATGGTCGAGCGCGCCGGTGCCGATTCCTGCC GCCCCGAAGACCTGCCAGAGCAATTTGGCCTGCGCGACGGCAAGTACTACCTTTCGCCAGAACAGGCCCAGGCCATCCTGGACCTGCGCCTGCACCGCCT GACTGGCCTCGAGCACGAGAAGCTGCTGGCCGAGTACCAGGAAATCCTGGAGCAGATCGGCGAGCTGATCCGTATCCTCAGCAGCGCTGAGCGCCTGATG GAAGTGATCCGCGAAGAACTCGAAGCGATCCGCGCCGAATATGGCGATGCCCGCCGTACCGAGATCCTGAACGCCAGCCACGACCTCAACTACGGCGACA TGATCCCGGAAGAAGAGCGCGTAGTGACCATCTCCCACGGTGGCTATGCCAAGACCCAGCCGTTGTCCGCCTACCAAGCCCAGCGCCGCGGCGGCAAGGG CAAGTCGGCCACCGGCGTGAAGGACGAGGACTACATCGAGCACCTGTTGGTGGCCAACAGCCACGCCACCCTGCTGTTGTTCTCCAGCAAGGGCAAGGTG TACTGGAAGAAAACCTACGAAATCCCCGAAGCCTCGCGTGCTGCCCGTGGTCGCCCGCTGGTCAACCTGCTGCCGCTGGAAGAAGGTGAGCGCATCACCG CCATGCTGCAGATCGACCTGGAGGCCCTGCAGCAGAGCGCCGGTGCCGACGAAGAGCTGGAGGACGCGGATGACACCGTGCTCGAAGGTGAAGTGGTCGA GGTGGAGGAAGCCGACGAAGAAGACGGCGATACCCCTGAGTGGGCAGCCGAACCTACTGGCGCCTACATCTTCATGGCCACCGCGTCGGGCACCGTGAAG AAGACCCCGCTGGTGCAGTTCGCCCGTCCGCGTAGCAACGGCCTGATTGCCCTGAAGCTGAAAGAAGGCGACACCCTGATTGCGGCGGCCATCACCGACG GCGCCAAGGAAGTGATGATGTTCTCCGATGCGGGCAAGGTGATCCGCTTCGCCGAGAGCGTGGTGCGCGAAATGGGCCGTACCGCCCGTGGCGTGCGCGG CATGAAGCTGGGCAAGGGCCAGGAGATCATCTCCATGCTCATTCCAGAGTCCGGTGCGCAGATCCTCACGGCCTCCGAGCGTGGCTTCGGCAAGCGTACC CCGCTGTCCAAGTTCCCGCGTCGCGGCCGTGGTGGCCAGGGCGTCATTGCCATGGGCACCAAGGGGCGCAACGGCTTGCTGATCGGCGCCATTCAGGTGC AGGAAGGCGAGGAGATCATGCTGATTTCCGACCAGGGCACGCTGGTGCGTACCCGGGTGGGCGAAGTGTCCAGCCTTAGCCGCAACACCCAGGGCGTCAC CCTGATCAAGCTGGCCAGCGACGAGACGCTGGTAGGCCTGGAGCGTATCCAGGAGCCGTCCGCTGAAGAGCTTGATGATGTGATCGAGTTGGACGAGGAG GGTGTCGAGGCCCAGGCGCCCGACAATGACGACGCTGCGGACGCCGAAGAGGCACCGCAGGACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAGGCGTTACACCCGAACGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGAGCGTAGCTCGCGATGTGGGCACCTCGGTTCCTGCAAGTTAA GTACTGACCGATCAAGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCGGGCCCTGCCGCGCTTCCGGATG CCGTGCTGCAGCGCGCCCAGGCAGAAATGCTGGACTGGCGTGGCAAGGGCCTGTCGGTGATGGAAATGAGCCACCGCAGCGACGACTATGTGGCCATCGC CGAGAAGGCCGAACAGGACCTGCGTGACCTGCTGTCCATCCCCTCGAATTACAAGGTGCTGTTCCTGCAGGGCGGCGCCAGCCAGCAGTTTGCCGAAATC CCGCTGAACCTGCTGCCTGAAAACGGCACCGCCGACTACATCGAAACCGGCATCTGGTCGAAAAAGGCCATCGAAGAAGCGCGCCGCTTCGGTCATGTCA
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| Amino Acid Sequence |
>DNA gyrase subunit A
MGELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRY LLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLALIDN PEVTIDELMQHIPGPDFPTAGLINGRQGIIEAYRTGRGRIYMRARSEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKD GMRIVIELRRGEVPEVVLNNLYSQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKA SPTPSEAKEALISTPWESSAVQVMVERAGADSCRPEDLPEQFGLRDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGELIRILSSAERLM EVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERVVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV YWKKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQSAGADEELEDADDTVLEGEVVEVEEADEEDGDTPEWAAEPTGAYIFMATASGTVK KTPLVQFARPRSNGLIALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRTARGVRGMKLGKGQEIISMLIPESGAQILTASERGFGKRT PLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVSSLSRNTQGVTLIKLASDETLVGLERIQEPSAEELDDVIELDEE GVEAQAPDNDDAADAEEAPQD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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