Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0115400
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva DSM 17004 H619DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGTGGTCGGCTGCATCATCGCCACCCGTTTGCTCAACACCTTGGGCCGACGCACCACACTGCTGCACAGCTTTCTGTGGTCGGGGCTGGCGCTGCTTGG CCTGGGTGCCTGCAGTGCCGGCTCCGAGATGCTGATTTTGGTGCTGTTCGGTGCGTACGCCTTGTTCATTGGCGGCGCCCAGGTACTGCAACTGGTCTAC CCCAACGAGTTGTTCCCGACCGAGATCCGCGCTGGCGCAGTAGGCGTGGGTACCTCCCTGTCTCGCGTAGGGGCGGCGGTGGGCACCTGGCTCGTGCCAA TTGGCCTCGACACCTATGGCATCGGCGCAACGATGTACGCAGCGGCGGGGGTTACGTTCATCGGCCTGGCGTTCTCGTACGCACTGGCGCCTGAGACGCG CTCCATGAACCTGCAGCAGGCGGCGTCACTCGCTTGACCCAGCCAAGCCGCGGCGTGCGTGCGTCGTGGTTTTAATCCAACGACATACTGGAGATATACC
|
|
| DNA Sequence for Gene |
>H619_RS0115400
GTGAAGTTCGAAGGCATCTACACACCTGCAGTGACCCCGTTGTCGGCCGACGGCTCGATCGACAAAGCGGCCTTTGCCGACGTTCTCGAGTACCTGGTCG ATTCGAAGGTGCACGGGGTCATCATCGGCGGTTCAACCGGCGAATACTACGCCCACACCTCCCAAGAGCGCGTTGAACTGGCCGCACAGGCCAAGGACGT GCTCAATGGCCGCCTGCCATTGATCGTGGGCACCGGCGGCATCCGCACCGAAGACGCCGTGGCCTTCGCCCAGCACGCCAGGGACATCAAGGCCGATGCA CTGCTGGTGGGCACCCCGCCGTATGCACTGCCGACCCAGCAGGAAATCGCCCTGCACGTCAAAGCGGTCGATGCCGCTGCCGGCCTGCCGATCATGCTGT ACAACTACCCAGGCCGCATGAGCGTGAGCATGGGCGAAGCGTTCTTCGACGCCGTTGCTGACGTGAAAAACATCGTCGCCATCAAGGAAAGCTCAGGTGA CATGGCCCAGTTGCACCGCCTGGCCATCAAGCGGCCGAACATCCAGCTTTCCTGCGGCTGGGACGATCAGGCCCTAGAATTTTTCGCCTGGGGCGCCAGG AGCTGGGTCTGCGCCGGTTCCAACTTCATCCCGCGTGAGCACGTGGCCCTGTACGAGGCCTGCGTGATCGAGAAGAACTTCGACAAGGGCCGCAAGATCA TGGCCGCGATGATGCCGCTGATGGATTTCCTCGAGGGTGGCAAGTTCGTCCAGGCCATCAAGTACGGCGTTGCCCTCAATGGCCTGAATACCGGTGGTGT GCGCAAACCGTTGTCCGACCTGGATGCCGCCGAGAAAGACACGCTCAAGCAGGTTGTAGCTGAACTGAAAGCCACCATCGCCCAGATCAACTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGAGCCTTGAACATGGCTGACTTGCTGAGCAAGGATCAATACGCGGCCATCGCCGCCGACCTGCAACTGCGCACCCAGGCGTTCATTGACGGTGAATTCC GCGACGCGATCTCGGGTAATACCTTCGTCACCACCAACCCGGCTACCGGCGAGCAGTTGGCCGAGGTCGCAGCCTGCGATGTCAACGACGTCAACGTCGC CGTGGCCGCAGCCAAACGTGTGTTCGAGAAGGGCACCTGGTCGAAGATGCAGCCGAACGACCGCAAGCATGTGTTGCAGAAGTTCGCCCAGTTGCTCGAA GACAACGCCCACGAGTTGGCAGTGCTGGAAGCCTTGGACAGTGGCAAGCCGGTCAGCGAGTGCCAGACCGTCGACGTGCCGGAGACCATCCACACTGTCC GCTGGCACGCCGAACTGATCGACAAGATCTACGACGCTACCGCCCCGACCGGCAATGCAGCAGTGACCATGGTGGTGCGCGAAGCAATCGGTGTGGTCGG
|
|
| Amino Acid Sequence |
>dihydrodipicolinate synthetase
MKFEGIYTPAVTPLSADGSIDKAAFADVLEYLVDSKVHGVIIGGSTGEYYAHTSQERVELAAQAKDVLNGRLPLIVGTGGIRTEDAVAFAQHARDIKADA LLVGTPPYALPTQQEIALHVKAVDAAAGLPIMLYNYPGRMSVSMGEAFFDAVADVKNIVAIKESSGDMAQLHRLAIKRPNIQLSCGWDDQALEFFAWGAR SWVCAGSNFIPREHVALYEACVIEKNFDKGRKIMAAMMPLMDFLEGGKFVQAIKYGVALNGLNTGGVRKPLSDLDAAEKDTLKQVVAELKATIAQIN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|