Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0115300
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva DSM 17004 H619DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGAACAGACCTTCATCGAGCGTGCCTACCGGCTGGCGCCGCTGCGGCTGCTGGCACTCGCCTGCATGCTCGGCAAAGGTGAGGTCGACGCCCAGTGGCT TCAGGTGCGCACGGGCCTGCTGCGGCGTGCGCAAACCCTGTCGCGTATGCTGGAACTGCAGTTCGGCCCAAGTGCCGCTGTGCACCCACCCCAGGGTGGC CTGCTGCTCTGGGTACGCCTGCGCCGGGCACCGCAGTGGGGCCGCGTGATGGCTGCCGTGGCAGGGTCTGAGCTGTATGCAATGCCTGGGGCGGAGTTCA GCCTGCAAGGCCGCTATCGGCATTATCTGGCGCTGGGGTGGCTGGGCGACGACCCGGTGGAACTACAGGCGGCTGTAGAGCGTTTGGCGAGGGCCGCAGA CAGTCGCTAGCGTGTATGGCCCGACCCGCGGCACTTGCCAGGCTGGCAGGTCTGTATGTATAAACAGTGTCCCTGAGAGCCGCCGCCTGCCCTGATTTCC
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| DNA Sequence for Gene |
>H619_RS0115300
GTGATTGCCCATTCCGTCGACGACCCTTTCTACTACCTGCACAACTTCCGCCAGGTGCTGGCGTGGGTGGGGCAGCGCTACGAAGACCTCCTCGATGAGC AAGAGAAGGCTTTCATCGCTGCCTTCACTCAGCTTGAGGCGCCTGCCCAGGCGCTGCTGGTGCGCATGGTGATGCGCAAGGGCGAGCTGTTTCGCGGTGA TCGCCTTGAGTATGACGAAATAGGCGATACCTGCCAGGCCCTGCAACCGCTGCAGGCGCTAGGCTGGGTACGCGAACCCGAGCGGCTTGAACTTGAGCAA TTGTTCGCCCTGTTGCGCAAGGACGAACTGGCCGACTGCTTCGCTGACCGGTTGAGCCGGCCGCGGGCGGCCAAGTATGAATGGCTGAGCCACCTGCAAG AAATGGCCTTGGCACCGCGGTCATTGGCCGAATGGTTCCCTGCCACCGGCGTGCGCATTTATGAGTGGTGCCTGCAACCGGTATGCGACCGGATCCGACT GCTGTTTTTCGGCAACCTCTACCAGGACTGGTCCGACTTCGTGCTGGCCGACCTCGGGGTGATGCGCTACGAACACGTGCCGTTCAGTGCCGACTCTCGT GCCCTGCAGCAGCGCACTGATCTGGACTTGGCCATGGCACTGCATCGATGCGCCGAGCGGCTGGACCAGGGCGACGACACCCTGTCGATACTGGCAACGC TGCAGGGGCTGCGCAGTGAAAACCCATGGTTGGCACGGCGGCAGGCGCGGCTGTTGTTTGCGCTCGGCCAGCAGTGTGAACGGCAGGGTGAGTGGGACCA GGCCATGGCGGTGTACACCCAGTGCAGTCATGCCCAGGCACGCATCCGCCAGGTGCGCGTGCTGGAACGCACCCAGTGTTGGGCCCAGGCGCACGCGTTG GCGCTGCAACTGGCAGCAGCGCCAGCCAATGCCCTGGAGGTGCAGGCGCTGGAGCGCATGCTGCCGCGGCTGGCGCGCAAGCTTGGCGGCCCACCGCAGC GCCGCCAGCGGGCGGCGCCGCTGGAGCTGATTGAGCTGGAACTGCCCCGGGCCCATGCAGCACTGGGTGTTGAAGAGGCCGTACGCCAGCACTTGGCGCA GGCGGGCGGGCAGGTGCATTACGTAGAGAACACGCTGTTCAACAGCCTGTTCGGCCTGTTGTGCTGGGAGGCCATTTTTGCGCCGGTGCCGGGCGCGTTC TTTCACCCGTTCCAGGCGGCGCCCCAGGACCTGCATGACAGTGACTTCCAGCACCGTCGCAGTGCGGATTTCGCCCGCTGCCTGGGCCGCCTCGAAGACG GCAGCCACCAGCAGGCGATTCTCGATTGCTATGCGGCCAAGCGGGGGTTGCAGTCACCGTTCGTGTTTTGGGGCATGCTCAGCGAAGCGCTGCTGCAGCA AGCCTTGGCGTGCCTGCCCGGCGAGCACCTCAAGCAATGCTTTTTGCGCTTGTTGCAGGACATACGCAACAACCGTACCGGCATGCCGGACCTTATCCAG TTCTGGCCAGAGCAGGGCCGCTACCGCATGGTCGAGGTGAAAGGGCCGGGTGACCGCCTGCAAGACAACCAGTTGCGCTGGCTGGAGTTCTGCCGCGCCC ATGGTCTACCGGTGGCGGTGTGTCACGTGCGCTGGAGCGATGCGGCGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTACAGCGTGGCGGTGCGTGCCTTGTGCGAGTTCAGTGCCAAGGTGGGCGACCTGGACCTGCGCTTCACGCCTTCGCCCACCGCACAGGAAGGCATCGA AGGCCATCGCCGGGTGGTCGCACGCCGGGCGGCTGGTTACGAATCGGAAATCCCCCTGGAAGGTGAATACCAGGCCCTGCGAGTGCGCGGCCGCGCCGAC GGCTATGACCCTGCCTGCAATCGCCTCGAAGAAATCAAGACCCACCGCGGTGACCTGGCGCGCCAGCCCGCTAACCATCGCCAGCTGCACTGGGCCCAGG CCAAGGTCTATGCGTGGCTGATGTGCCAAGCCCGGCAGCTGCCTGCGATCGAGGTGGCGCTGGTGTACCTGGATGTGGACAACGATGGCCAGACACTGAT CAGCGAGCACCACACAGCGGGCGACCTGCAGGTCTTTTTCGAGGCCCAGTGCCAGCGGTTTCTGGCGTGGGCACATTACCAGCAACAGCGCTTGGCCGAG
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| Amino Acid Sequence |
>nuclease
MIAHSVDDPFYYLHNFRQVLAWVGQRYEDLLDEQEKAFIAAFTQLEAPAQALLVRMVMRKGELFRGDRLEYDEIGDTCQALQPLQALGWVREPERLELEQ LFALLRKDELADCFADRLSRPRAAKYEWLSHLQEMALAPRSLAEWFPATGVRIYEWCLQPVCDRIRLLFFGNLYQDWSDFVLADLGVMRYEHVPFSADSR ALQQRTDLDLAMALHRCAERLDQGDDTLSILATLQGLRSENPWLARRQARLLFALGQQCERQGEWDQAMAVYTQCSHAQARIRQVRVLERTQCWAQAHAL ALQLAAAPANALEVQALERMLPRLARKLGGPPQRRQRAAPLELIELELPRAHAALGVEEAVRQHLAQAGGQVHYVENTLFNSLFGLLCWEAIFAPVPGAF FHPFQAAPQDLHDSDFQHRRSADFARCLGRLEDGSHQQAILDCYAAKRGLQSPFVFWGMLSEALLQQALACLPGEHLKQCFLRLLQDIRNNRTGMPDLIQ FWPEQGRYRMVEVKGPGDRLQDNQLRWLEFCRAHGLPVAVCHVRWSDAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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