Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0114095 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva DSM 17004 H619DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTCGTCGGCATCCACCTCGGTAAGCGCCATATCTGCCGGGCCGCCATGGCCGGGTTCGTGCGGGTCGCGCGCGCCGGTTTCATCCAGCAGCGTGTCAGG GCTCAGGTCATCGTAGGTCACGTTGTCTTCGTGCAGGCTGTCGGTCAGGGCCTCGCCCCCGGTCATGCCGCTTTCGGCCACGCGCTCAGCGGGGAACTCC TGCTCGATGTCACCTGCAGGCCGTTCATCACCCACCCGCCCTCGCCGCTCGTCCAGGCGTTCACTGAAATCCAGTTCGTGCACGCTGCCCATGCGGTCTT CAATGTTGTCGATCTCAGTGGGTGTGTAGGGCTTAGGGTCGTTTGGCTTGGCCATGTGGCGTCTCCTTCAAGTGGCTCACTTGTGGTCGACTCTGCCCGG CGCAGGAAGATTCAGAGTTTTTCCGGGCTATCCGATTTATTGAACTCCCTGTTCCACGGTTGCCTCCCAACACCAAGACACTCATGGTGTGGAGCCAGTG
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| DNA Sequence for Gene |
>H619_RS0114095
|ligD
ATGGCAAGGTCCCTAGCGGAATATGCACGCAAGCGCGATTTTGATGCCACGCCGGAGCCCAGTGGCCAAGGGGGCAAGCGCAAGCGCGCCCATGCCTTGC AGTTCTGCATCCAGAAACATGATGCCAGCCACCTCCACTACGATTTCCGCCTGGAACTTGAAGGCACGCTGAAGAGCTGGGCCATACCCAAAGGCCCTTC CCTGGACCCGAAAGTACGAAGGCTGGCGGTGCACGTAGAAGATCATCCGCTCGAGTACGCCAGCTTTGAGGGGCATATCCCTGAAGGCCACTACGGTGGC GGTGATGTCATTGTGTGGGACAGAGGCGTATGGGAGCCCGAAGGCAACCCGGCCGAGGCTTATGCCAAAGGCAAGCTGCGCTTCCGCTTGCAGGGCGAAA AGCTTGGCGGCGTGTGGAACCTGTTTCGCACACGGATGGCGGGCAAGAAAGAGCAGTGGATGCTGGTCAAATCCAATGACAGCCAGGCCCGCCCCGAAAG CGAGTACGTCGTGGTGGATGAGCAGCCCGACAGTGTGCTCAGTGACCGGACCTTGATACCGAAAGCCAAAGTGCCCAAAAAACCGAGAGCCAAGGCGGCT GCACGCAAGCCAACGGGCGCCGGGCTGCCGACAGCGCTTGAACCACAACTGGCAACCTTGGTTGAAACGGCGCCCCGTGGTGAATGGCGCTATGAGGTGA AGTTCGACGGCTACCGCATTCTCGCCCGTGTCGATGGGGAGGATATACGCCTGTTTACCCGTAACGGTCATGACTGGACCGCCAAGATGCCAGGCCAGGT CGCGGCGTTGCGTGCACTGGGGTTGGATTCAGCCTGGCTCGACGGCGAGATGGTGGTCAACGATGCCGAGGGAGTGGCCGATTTCCAGGCGCTGCAAAAT GCGTTCGACACCGAGCAGGATGATGCCATTGTCTATTACGTCTTTGACCTGCTGTTCCTGGGCGGTGAAGACCTTCGTCCCCTGCCCTTGCAGCAACGTC GTGCAACCCTGCAACAGCTGCTACAACACAGTGCCGATGGGCGGCTGATGTATTCAGCAGATTTCGATCAGCCGGTCGATTCGTTGCTCCAAAGTGCCTG TCGCCTTGGGCTGGAAGGGCTTATCGGCAAACGCGCCGATAGCCCCTACCTGGGTAAGCGCAGCGCTGACTGGGTCAAGCTCAAGTGCGGTCGCCGCCAA GAGTTTGTAGTGGTTGGCTACACCGACCCCAAAGGTAGCCGGAAAGGCTTTGGCGCCTTGCTCCTGGCCCTGCATGACGGTGAAAAGCATCAGCTGCGCT ATGCCGGCAAGGTGGGCACCGGGTTCAGCGCAGCAACGCTGGCCAGCCTGCGTGCCCGCCTCGAACCGTTGCAGGTGGCTGAGCCTGCGCTGGCCCACCC ACCGACTGGCGCAGAGGCGCGGGGCGTTCACTGGCTGCAGCCAGTGCTGCTGGCAGAGGTCGCCTACGCGCAGATGACCCGTGACGGCATCGTTCGCCAT GCGGTGTTCCATGGGCTACGGCACGATAAACCCGCCCGCCACATAGACCTGGAGCAACCCATGGCCGGCAAAAGCACCGCCAGGCGCAAAGCCACTGAGC TACCGGAAGATCTGGGCAAACTGCGCCTGACCCACCCGGACCGGGTGATCGACGCCACTACGGGCGTCACCAAGCGCGAAATTGCCCACTATTACGCTGC TGTCAGTGAGTGGATCATCCCGCAACTCAAGCACCGACCCGTGGCCTTGGTGCGTGCCCCCGATGGGCTTGAGGGTGAGCTGTTCTTTCAGAAGAACGCC GAGCAGTTTCACATCCCTCACCTGCGCAGCTACGACAAGGCCGAAGCAGGCCAGGCTGCCATGGTCATCAATCGGCCAGATTCCCTGTTGGGTGCCGTAC AGATGAACATGCTTGAGCTGCACACCTGGAATGCAATCGATAGCAACTTCGACAAGCCGGACCGGTTCGTCCTGGACCTGGACCCTGACCCGGCGCTCCC CTGGAAAGCCATGCTGGAGGCTACCCAGCTGACCTTGACCCTGCTCGATGAACTAGGGCTCACCGTGTTCATCAAGACCAGCGGCGGTAAAGGCATTCAT CTGGTGGTGCCGCTGACGCGCCGGGCGGGCTGGGAAGAGGTGAAAGCGTTCAGCCACGCTATCGTGACTTATCTAGCCCAGTTGTTCCCGGACCGACTGA CGGCAGTCTCAGGCCCAAAAAACCGGGTGGGCCGCATTTTTATCGACTACCTGCGCAATGGCAAAGGTGCCACAACTGCCTGCGCCTATTCGCTGCGTGC CCGCGAAGGCCTGCCGGTTTCCGTGCCTATCTGGCGGGAAGAGCTGGCCCAGCTCAAGGCCGCCAATCAGTGGACCATCGCCAACCTCGCGCAGCGTCTA GCCGAGGTGGACGACCCCTGGGCAGCGCTGGGCAATACCCGGCAGTCCATTACCGCGCGCATGCGCCGACAATTGGGCCTGGAGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGCCCAGTACCAAGCCAAGGAGGGACGCCAATGACCACCGCGCAGGACCTCGACCTGACTCACCTGGACCGCGTGCTGCGCCCCTTCGGCGAGCGCCCG CAACCGCTCAGCCTGGATACGCAATTGCCGCCACTGCTCCAGGCCCTGCAAGCCGATCATCTGGACCAGCTACCATTGCCCGGCCACGGTGACACGTTGC GGCGCTGGCAGACTCTTGCCCGGGTGGCCGGGTGCGATCTGGCCCTGGCGAAGCTTTACGAGGGCCATACCGATGCATTGGCGATCATGGCCGAATGTGG TGCCGCTCATTACGCTGAGAGCGGAATCTGGGGCGTGTGGGCGGCCGAGCCTCCTGACGCTCGAGCCATTATCGTTGCGCGGGATGGCACCCAGGTTCGC CTGGGCGGCCGCAAGGCCTGGTGCTCGGGTGCCCTACAGGTCGACCGGGCGCTGATCACGGCGTGGGACGAAGAAATGCGTCCGCAACTGGTCGCCATCG
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MARSLAEYARKRDFDATPEPSGQGGKRKRAHALQFCIQKHDASHLHYDFRLELEGTLKSWAIPKGPSLDPKVRRLAVHVEDHPLEYASFEGHIPEGHYGG GDVIVWDRGVWEPEGNPAEAYAKGKLRFRLQGEKLGGVWNLFRTRMAGKKEQWMLVKSNDSQARPESEYVVVDEQPDSVLSDRTLIPKAKVPKKPRAKAA ARKPTGAGLPTALEPQLATLVETAPRGEWRYEVKFDGYRILARVDGEDIRLFTRNGHDWTAKMPGQVAALRALGLDSAWLDGEMVVNDAEGVADFQALQN AFDTEQDDAIVYYVFDLLFLGGEDLRPLPLQQRRATLQQLLQHSADGRLMYSADFDQPVDSLLQSACRLGLEGLIGKRADSPYLGKRSADWVKLKCGRRQ EFVVVGYTDPKGSRKGFGALLLALHDGEKHQLRYAGKVGTGFSAATLASLRARLEPLQVAEPALAHPPTGAEARGVHWLQPVLLAEVAYAQMTRDGIVRH AVFHGLRHDKPARHIDLEQPMAGKSTARRKATELPEDLGKLRLTHPDRVIDATTGVTKREIAHYYAAVSEWIIPQLKHRPVALVRAPDGLEGELFFQKNA EQFHIPHLRSYDKAEAGQAAMVINRPDSLLGAVQMNMLELHTWNAIDSNFDKPDRFVLDLDPDPALPWKAMLEATQLTLTLLDELGLTVFIKTSGGKGIH LVVPLTRRAGWEEVKAFSHAIVTYLAQLFPDRLTAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRAREGLPVSVPIWREELAQLKAANQWTIANLAQRL AEVDDPWAALGNTRQSITARMRRQLGLEQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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