Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0113155
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva DSM 17004 H619DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCAAGGGTCAGGCGCCGCCGATGTCTGTCTGCGCCTGCTGGATTCAGGTTGCCGAGTATCGGTGACGGGTGGCCGCGTGCGCCTGCAGCCCGGGAATGG CTCGCCCGTGGTCCTCGAAGCCGGCCAGCAGGCTAGCCTGCTCGGTAGCGGGGTGGATGCCGTGACCACTGTGGAACCCTGGCTGCTGGGCTGGCGCGAG GGCGTGCTGCGCCTGGATGATCGCCGCCTGGGCGAACTGCTGGCCGAGCTGCGCCGGTATCGCCCCGGCGTGCTGCGCTGGTCACCGGCCATCGACGGGT TGCGGGTCACCGGCACCTTCCGCCTGGACGACACGGACCAGGTACTGGCCCTGCTCGCCGCCAGCCTGCCGGTGCAGGTGCAGGCCCGCACCCGTTATTG GGTCACCCTGGCCCCACGAGAAAATTCCGCATGAGGCTGTCCCCTTTTTTTCGCTCACCGGTCATTACCGGTAGAAGACCATGAAGGGGAGCTTTTTCAG
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| DNA Sequence for Gene |
>H619_RS0113155
ATGCGTGCAGTAAAGTCCAACCGCGTGCGCCCGCTGGTGCGCGCCGTGCGTCCGTTGTTTGCCATGAGCCTGCTGCTGAGCCTGCCCACCTGGGCCGAGG AGCCCGTGCGGCGGGCTTACCAGGTCCCTGCCGCCAGCCTTGGCGCGGCCTTGACCCGCTTTGCCGACCAGGCTGGCGTGAGCCTTTCGCTGGACCCTGC GCTGGTGCGTGGTTTGAACAGCGAGGGGTTGTCTGGCCGCTACAGCGTGGATGAAGGCTTCATGCACCTGCTGCGCGGCAGTGGCCTGCAACTGCTGCCG GTCGGCGAGGGCGCCTTTACCCTCATGCCGGCACCGCAAGCGGGCGCTGCCCTGGAAATCGCCCCCACCAGCATCGTCAGTGGCCTGCCCGCCGGCAACG ACGCACAGCCCTATGCCGGCGGCCAGGTGGCGCGGCAGGGTGCCCAGGGCCTGCTGGGGGCGCGGGACTTCATGGAAACGCCGTTCAGCATCACCAGCTA CACCAGCGACCTGGTCAAGAACCAGCAGGCGCGCACCTTGGGTGAGCTGGTCGCCAGCGACCCTTCGGTACGTACCACCAACCCGGCGGGCGGGCGCTTC GAGCAGTTCACCATTCGCGGTTTCAGCCTGTTCAACAGCGACGTGGCCTACAACGGCCTGTACGGCCTGCTGCCGACCTATTCCATCGACATGGAAATGG CCGACCGGGTGGACATCATCAAGGGCCCCAGCCAGCTGATCAACGGCATCGCCCCGCGTGGCAGCGTAGGGGGCGGCATCAACGTGCAGCCCAAGCGCGC CACCGACAAGCCCATCACCGAGTTCACCGGCAGCTATGCCTCGGCAGGCCAGGCAGGCGGCGCGGTGGACATTGGCCGGCGCTTCGGTGAAGGGCAGCAG TTTGGCGTGCGCTTCAACGGTGTGAAGCAATCGGGTGACACCGAATGGGACCACCAGAGCGTCGACCGTGAAATGGCGGTGCTGGGCCTGGATTTTCGCG GCGACCGCCTGCGGCTGTCGGCCGACCTGGGCCATACCGAGCGCGATACCGACGCCCCGCAGGAGCGGGTGCTGGTGGGCGCGCGCGCCAAGGTGCCGAA GGCCAGCGATGTGCACCGCAACTACGCCCAGGCCTGGAGCAAGGCGCGTACCAACGACACTTTCGGTGCCGTGCATGCCGAATACGACATCAGCGAATCG TTGCTGGCCTACGGCGCTGTGGGCGCGCGCAAGAGCAACCATGACTTCCTGCGCCACAACGTGTCGATCATCAACGATGCGGGCGACTTCACTGTGCAGC CACGTGACTTTACCCGTGACGAGTCGGTGCGCACGGCCATGGCCGGGTTACGCAACTGGTTCCACACCGGCCCGGTCAGCCACGAGGTGAACCTGGCCGC CACCTACTACTACATGGACTTCACCAACGGTGGCGCACGCTATGCGTCGTCGCCCAGCAACCTGTACCACCCGGCCGCACTACCGGCCCCTGGCACACCC ACCCGGCGCGACTCCAAGGACTACACCGAGAACCGCTTCTCGGGCGTGGCCCTGGCCGACACATTGGGCTTTTTCGACGACAACCTGCTGGTCACCCTGG GCCTGCGCTGGCAGCGCGTGCAGGTGGACGACTGGAGCGATGGTGTGAAAGGCGACACAGCCTACGACGAAGAAAAGGTCTCGCCGTCGGGCGGCGTGCT GTTGAAAGTCACCGACCAGTTGTCGTTGTACGCCAACTACATGGAGGGCTTGAGCCAGGGCAAGATCGCACCTTCGACCTCCATCAACGAAGATGAAATC TTCCCGCCGTTCACCAGCCGCCAGGTTGAAGTGGGCGCCAAATACGACCTGGGCAAGGTCGCGTTCACCGCCAGCGCGTTCCGTATCCGCCAGCCCGCTT ACGAAACCAACCCCGGCTCCCGCGTGTTCGGTGCCAATGGCAAGCGCAACAACCGTGGCATCGAGCTGAGCGTGTTCGGCGAGCCGCTGGACGGGGTTCG GTTGCTGGGCGGTGTGATGTACATCGACAGCGAACTGACCGATACCGTGGGCGGCGCCTATGACGGCAACCGCGCCCCCGCCACTCCGGAATACAACGTC AACCTGGGCGCCGAATGGGACGTACCCGGGGTGGACGGCCTGACGCTGACAGCGCGCGGCACCCACTCCAGCTCCCAGTACCTGGACCAGAACAACAGCA AGAAGATCGACGGCTGGGAGCGCTACGACCTGGGTGCCCGCTATGCCTTCAAGGTGGACGCCACGCAGGTCACCCTGCGCGCCAGTGTCGAGAACGTGCT GGACGACCGCTACTGGAGCTCGGCCGGTGCGCCCGATGACGCCGAGCCGGGGCTCACCTTGTCCACCCCGCGCACCTACCTGCTGTCGGCCACCGTGGGC TTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCCGGCGGCTGCTATGCCGGGTCGGGAATGACGGCGATCACGTCGATCTCCATCAGCCACTCGGCCTGGGCAAGCCCGGCAACCACCAGGCCGGTAGA GATGGGGAACACCCCCTTCAGCCATTTGCCCACTTCCCTGTACACCGGCTCGCGGAAACGCGGGTCGGTGATGTAGGTGGTGGTCTTGACGATGTGCGAC AGGTCGGAACCGGCTTCTTCCAGCAATTGCTTGACGTTCTTCATGGCTTGCTCGGCCTGCGCCCGGGGGTCGCCCAGGCCTACCAGGTTACCTTCGAAGT CGGTGCCTACCTGGCCGCGAACATAGACCGTGTTGCCGGCGCGCACCGCCTGGCACAGGTCGTTGTCCAGGGTCTGGTTGGGGTAGGTGACCTTGGTGTT GAACATGCGGATGCGGGTGTGGGTAGGCATCAGTGGGCTCCTAGGGTGCTGACGGTGCTGAGCTTGGGGTGTGGCTGGTCATCAGCGGCGCGCTGCTCGC
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| Amino Acid Sequence |
>TonB-dependent receptor
MRAVKSNRVRPLVRAVRPLFAMSLLLSLPTWAEEPVRRAYQVPAASLGAALTRFADQAGVSLSLDPALVRGLNSEGLSGRYSVDEGFMHLLRGSGLQLLP VGEGAFTLMPAPQAGAALEIAPTSIVSGLPAGNDAQPYAGGQVARQGAQGLLGARDFMETPFSITSYTSDLVKNQQARTLGELVASDPSVRTTNPAGGRF EQFTIRGFSLFNSDVAYNGLYGLLPTYSIDMEMADRVDIIKGPSQLINGIAPRGSVGGGINVQPKRATDKPITEFTGSYASAGQAGGAVDIGRRFGEGQQ FGVRFNGVKQSGDTEWDHQSVDREMAVLGLDFRGDRLRLSADLGHTERDTDAPQERVLVGARAKVPKASDVHRNYAQAWSKARTNDTFGAVHAEYDISES LLAYGAVGARKSNHDFLRHNVSIINDAGDFTVQPRDFTRDESVRTAMAGLRNWFHTGPVSHEVNLAATYYYMDFTNGGARYASSPSNLYHPAALPAPGTP TRRDSKDYTENRFSGVALADTLGFFDDNLLVTLGLRWQRVQVDDWSDGVKGDTAYDEEKVSPSGGVLLKVTDQLSLYANYMEGLSQGKIAPSTSINEDEI FPPFTSRQVEVGAKYDLGKVAFTASAFRIRQPAYETNPGSRVFGANGKRNNRGIELSVFGEPLDGVRLLGGVMYIDSELTDTVGGAYDGNRAPATPEYNV NLGAEWDVPGVDGLTLTARGTHSSSQYLDQNNSKKIDGWERYDLGARYAFKVDATQVTLRASVENVLDDRYWSSAGAPDDAEPGLTLSTPRTYLLSATVG F
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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