Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0109410
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva DSM 17004 H619DRAFT_scaffold00014.14_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGTTCACTGCCCACCCGTAGTCGGCCGGGTAGATGTCGCTGGTAAACCGTTCTTCATAGCCGTGCAATTGGTCGGGGCCGCAAAAATGCATCTTGCCCGA CAGCGCCGTGCGGTAGCCCAGGCGGCGCAGGTAGTGGGCATACGTGGGCACGTCAGCGGGGAAGTCGGCGGCATTGTCGTAGGCGCCGATACGGCTGGGC AGCTGGCCACTCACCAGAGTGAAGCGTGAGGGTGCACACAGTGGGCTGTTGCAGTAGGCCGAGTCGAATACCACGGCTTGCTCGGCCAGGCGGCTGAGGT GGGGCATCTGGATGGGGGACGGGCCGTAGATGGGCAGTAGCGGCGCCGCCATCTGGTCGGCCATGATGAACAGGATATTGGGGCGCGTCATGGGAAGCTT CCATCGTCGAGGGTTATGCGAACCGCTTGCCTAACAAGATGCGACTGTGGATAACATGGGTAAAGCCCATGGCGGGCAATGACTGGGATTAGCTGCACTT
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| DNA Sequence for Gene |
>H619_RS0109410
ATGTTTGAGCACTTGGCCGACGTGTCGCTGGATACCTTGCGCGTGTTCGAGGCGGCAGCGCGATTGCGTGGGTTTACCGCAGCCGCGTTGGAGCTGGGCA CTACTCAGCCAGCGGTCAGCCAGCAGGTTAAACGGCTGGAGGCGCAGCTAGGCACCCGCTTGTTCGACCGCATCTATCGCGGCATCGAGCTAACCGAGGC TGGCCAACTGCTGTTCGCGCACGTGAGCCAGGCCATGCACACGCTGAATGACGGAATCGCCCAGGCCAGTGGGCGCCACCAGCGCGAGGTATTGCAGGTG GCGACCGATTTTGCTTTCGCTGCCTTTTGGCTGATGCCCCGCCTGCAGCGTTTTCATGAGGCTTATCCACAGGTAGATGTCAGCCTGGTGACCGGGGAAC GCAGCCAAGGCATGATGCGCCCGGACATCGATGTGGCCGTGCTGTTCGGCGATGGCCGCTTCCGCCAGGGGGAAAGCCGCTGGCTGTTCGATGAAGAGGT TTTCCCCGTGTGCAGCCCTGGGCTGATCGGTGGCAAACCCTTGTCAGCCGAGGCTTTGCAACGTTTGCCCCTGTTGCACCTGAAGGGCGAGCAGTCCAGC CGCTGGTTCGACTGGGCGGGGGTGTTTCATGGGTTGGGTGTGGCCAGCCCGCCGCCGCCGGGGCAGCTACGCTTCGACAACTACACACTGCTGATTCAGG CTGCCATTGCCGGGCAAGGGGTGGCGATCGGCTGGGGGCACCTGGTGGACAGCCTGGTGGACCAAGGCCTGCTCTGCCGGCCATTGCAAGGCAGCCTGCG GTCGGCACGCGGGTATTACGCCGTGCTGCCGCCGCGCAAGCGCCGTGGTGCGCTGATAGAACGCTTTGTAAGCTGGTTGGAGCAGGAGCGCGAGCGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTTCCAGGGCGCTCATCGGTTTTGGCCGGGTATAGTCATGGCCATTGCAGCAGCGGAGGTAAGCATGCAGAGAATCAAGGGTTACCACGCCCACGTTTAT TACGATGCCGCCACCCTGGAACAGGCCCGTGAGCTCTGCGAGGAAGCCGCGCGGCTGTTCCCGGTGACCATGGGCCGCCTGCACCAGAAGCGAGTGGGGC CGCACCCGGACTGGAGTTGCCAGCTGGCGTTCGAGCCGGAAATCGTCGGCGTGGTGTTGCCGTGGCTGGCGCTCAACCGCAAGGGGTTGGTGGTGTTCAT GCACCCGCTGACCGGGGATGAGCTGGCCGACCACCGCGACCATGCAATCTGGATGGGGGCGGTGCGCCCGCTGGACCTTTCGCTATTCGGTGGGTAATGC CCGGGCGGCCCTTACTGCCAGCTTACTGGCAGTAAGGGCAAGCCAGCTTAGCGCCGCGCGCCGCGCACGCCTTCTGCTAGCGCCGCACACAGGCTGAGCA
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MFEHLADVSLDTLRVFEAAARLRGFTAAALELGTTQPAVSQQVKRLEAQLGTRLFDRIYRGIELTEAGQLLFAHVSQAMHTLNDGIAQASGRHQREVLQV ATDFAFAAFWLMPRLQRFHEAYPQVDVSLVTGERSQGMMRPDIDVAVLFGDGRFRQGESRWLFDEEVFPVCSPGLIGGKPLSAEALQRLPLLHLKGEQSS RWFDWAGVFHGLGVASPPPPGQLRFDNYTLLIQAAIAGQGVAIGWGHLVDSLVDQGLLCRPLQGSLRSARGYYAVLPPRKRRGALIERFVSWLEQERER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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