Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0107080
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva DSM 17004 H619DRAFT_scaffold00008.8_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCGAGTAAGGCGCCATGCGTCTGCGCCTGATCGCGGTCGGCTCGCGCATGCCGAAGTGGGTGGAGGAAGGCTGGCACGAATATGCCAAGCGCCTGCCT GCGGAGTTGTCGCTGGAGCTGGTGGAAATTCCGCTGAATACCCGCGGCAAGAATGCCGACGTCGCCCGCCTGATTCGTCAGGAGGGCGAGGCCATGCTCG GCAAGGTGCAGCAGGGCGAGCGCATCGTCACGCTCGAGGTGCATGGCAAGCCCTGGAGCACCGAGCAATTGGCAGGCGAGCTGGACCGCTGGCGGCTCGA TGCACGCACGGTCAACCTGATGGTCGGTGGCCCGGAAGGCCTGGCGCCTGAGGTGTGTGCACGGGCCGAGCAACGCTGGTCATTGTCGCCGCTGACATTG CCGCACCCGTTGGTAAGGATACTCATCGGCGAGCAGATCTACCGCGCCTGGACGGTATTGTCCGGGCACCCTTACCACAAATGAACCTGTAAGCAGCCCG
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| DNA Sequence for Gene |
>H619_RS0107080
ATGTCGCAGCCGATCCGCCTCAAGGACCACGAGAAAGACGCCCGTCTTGTGCGCAACCGCGTCGTGGTCGGCGCCGTGGCGGTCATGCTGCTGGTGTGCG TGCTGATTGCGCGGCTGTATTACCTGCAGATCATCCAGTACGACTACCATTCGACGCTGTCGGAGAACAACCGGGTGCATGTGCAGCCGATCCCGCCCAC CCGCGGGCTGATCTTCGACCGCAACGGGGTGGTCGTCGCCGACAACCGCCCTAGCTTCAGTTTGTCCATGACCCGCGAACGTGCCGGCAACTGGCAGGAG GTGCTGGACAGCATCGTCGAGGTGCTGGAACTCACCCCCGACGACCGTGCCCTGTTCGAGAAGCGCATGCGCCAGGGCCGCCGGCCGTTCGAGCCGGTGC CCATCCTGTTCGAGTTGAACGAAGAGCAGATCGCCCGGGTGGCCGTGAACCAGTTTCGCCTGCCTGGGGTGGAGGTGGTTGCCCAACTGGTGCGGCATTA CCCCCAGGGTGCGCACTTCGCCCACTCGGTAGGCTACGTGGGGCGCATCAACGAGAAAGAGCTGAAAACCCTCGACCCGGTGAACTACAGCGGTACCCAT CACATCGGCAAGACCGGTGTCGAGCGGTTCTACGAAGATGCGTTGCACGGCCAGGTGGGCTATGAAGAGGTCGAGACCAACGCCCGTGGCCGTGTACTGC GGGTACTCAAGCGCACCGACCCCAAGCCGGGCAAGGACATTGTGCTGAGCCTGGACATCAAGCTGCAGGAAGCCGCCGAGGCTGCCCTGGCGGGCCGACG TGGCGCCGTGGTGGCGCTGGACCCGCGCACGGGCGAGGTGCTGGCCATGGTCAGCCAGCCGAGCTTCGACCCCAACCTGTTCGTTACCGGCATCAGCTTC AAGGCCTATGCCGAGCTGCGCGATTCGATCGACCGGCCACTGTTCAACCGCATTCTGCGTGGCCTTTACCCGCCGGGGTCGACCATCAAGCCTGCCGTGG CCATTGCCGGCCTGGACAGCGGCGTGGTCAACGCCAGCAGCCGGGTGTTCGACCCGGGGTACTACCAACTGCCCAATTACGACCACAAATACCGTAACTG GAACCGCACCGGCGACGGCTGGGTAGACCTGGACACCGCGATCATGCGTTCCAACGACACCTACTTCTATGACCTTGCGCACAAGATGGGCATCGACAGG CTGTCGAGCTACATGGGCAAGTTCGGCATCGGCCAGCGGGTGTCGCTGGACATGTTCGAGGAGTCTGCCGGGTTGATGCCGTCCCGCGAATGGAAACGCG CCACCCGCAGGCAGGCGTGGTTCCCGGGTGAAACCCTCATTCTGGGCATTGGCCAGGGCTACATGCAGGCAACGCCTCTGCAGCTGGCCCAGGCCACGGC GCTGATCGCCAACAAGGGGGTATGGAACCGCCCGCACCTGGCCAAGACCATCGAAGGCCAGCCACCGGTGGACGAAAACCCCATGGACAACATCGTGCTG CGCGACAAGGCCGACTGGGGCAGGGTTACCCACGGCATGGAGCAGGTGATGCATGGCGCCCGCGGCACCGCGCGCAAGGCAGCCCTCGGCGCCCAGTACC GCATTGCCGGCAAAAGCGGTACCGCCCAGGTAGTGGCCATCAAGCAGGGCGAGAAGTACGACCGCAACAAGCTTCAGGAGCGCCACCGCGACCACGCGCT GTTCGTCGCCTTTGCGCCGGCTGACGACCCGAAGATCGTGGTGTCGGTCATGGTCGAGAACGGCGAGTCGGGGTCGGGTGTGGCGGCGCCGGTGGTACGC CAGATCATGGATGCCTGGTTGCTCGATGAAAATGGGCGGCTCAAGCCTGAGCTCGCACCTGCCACCGTTACCCAGGAATCGCCCCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGAACAATTTCGACCGCATGCTCTCCAGCGAGGATGTGATGCGTCGCCGCGCCAGCTTCCTGCAGCGCATCCACGTTGACGGCCCTCTGCTGATCATTCT GCTCACCCTGGCGGCGGGCAGCCTGTTCGTGCTGTATTCGGCCAGTGGCAAGAACTGGGACCTGCTGCTCAAGCAGGCCACCTCGTTCGGCATCGGGCTG GTGTCCATGTTCGTCATCGCCCAACTGGAGCCGCGTTTCATGGCCCGCTGGGTGCCGCTGGCCTACCTCACGGGGGTGTTGCTGCTGGTGGTGGTGGACG TCATGGGCCATAACGCCATGGGTGCGACCCGCTGGATCAACATTCCGGGGGTCATACGCTTCCAGCCTTCGGAGTTCATGAAAATCATCATGCCGGCGAC CATCGCCTGGTACCTGTCCAAGCGCACGCTGCCGCCCCATTTGAAGCACGTGGCCATCAGCCTGGTGCTGATCGGCGTGCCGTTCATCCTGATCGTGCGC
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| Amino Acid Sequence |
>penicillin-binding protein 2
MSQPIRLKDHEKDARLVRNRVVVGAVAVMLLVCVLIARLYYLQIIQYDYHSTLSENNRVHVQPIPPTRGLIFDRNGVVVADNRPSFSLSMTRERAGNWQE VLDSIVEVLELTPDDRALFEKRMRQGRRPFEPVPILFELNEEQIARVAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYVGRINEKELKTLDPVNYSGTH HIGKTGVERFYEDALHGQVGYEEVETNARGRVLRVLKRTDPKPGKDIVLSLDIKLQEAAEAALAGRRGAVVALDPRTGEVLAMVSQPSFDPNLFVTGISF KAYAELRDSIDRPLFNRILRGLYPPGSTIKPAVAIAGLDSGVVNASSRVFDPGYYQLPNYDHKYRNWNRTGDGWVDLDTAIMRSNDTYFYDLAHKMGIDR LSSYMGKFGIGQRVSLDMFEESAGLMPSREWKRATRRQAWFPGETLILGIGQGYMQATPLQLAQATALIANKGVWNRPHLAKTIEGQPPVDENPMDNIVL RDKADWGRVTHGMEQVMHGARGTARKAALGAQYRIAGKSGTAQVVAIKQGEKYDRNKLQERHRDHALFVAFAPADDPKIVVSVMVENGESGSGVAAPVVR QIMDAWLLDENGRLKPELAPATVTQESPL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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