Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0106345
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva DSM 17004 H619DRAFT_scaffold00008.8_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAAAAGCTAAGATCGTTGCCGAACACCAGCAAGCCGCCGGCGATACCGGTAGCCCGGAAGTGCAGGTTGCTCTGCTGACCGCCAACATCAACAAGCTGCA AGGCCACTTCAAGGCCAACGACAAAGACCACCACTCCCGTCGTGGTCTGATTCGTATGGTTAACCAGCGTCGTAAGCTGCTGGACTACCTGAAGGGCAAA GACACCACCCGTTACAGCGCGCTGATCGCTCGCCTGGGCCTGCGTCGTTAATAACGGCCTGGTTGGTGGTGTGCATGGCGTGCCGCAGGCCTCGGCAAGG CTGTTATCCAGCCTTGCCGAGGGGCACGCCTTGCATATATTCGAGGTTGGCAGCCTGGCAATGCTGAGCGGTTATCCGCTTGGCGCCAGGCTCCCAGCCT CGTGTTGTATCTGGACGGTCGACGGGGCCGATTCCCCCTGCTGCCCAAGCATTCGCAAGAAACCAGTTCCCCCAAGAGCCACTGAAGAAGGTAGGAAACC
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| DNA Sequence for Gene |
>H619_RS0106345
GTGAACCCGGTAATCAAGACATTCCAGTTCGGTCAATCGACCGTTACTCTCGAAACGGGCCGCATTGCCCGTCAGGCAACCGGCGCCGTGCTGGTTACCG TCGACAACGACGTCACCGTGCTGGTGACCGTGGTCGGTGCCAAGCAAGCCGACCCAGGCAAGGGCTTCTTCCCGCTCTCGGTTCACTATCAGGAAAAAAC CTACGCCGCTGGCAAGATCCCAGGCGGTTTCTTCAAGCGTGAAGGCCGTCCTTCCGAGAAAGAAACCCTGACCTCGCGCCTGATCGACCGCCCGATCCGT CCGCTGTTCCCGGAAGGCTTCATGAACGAAGTGCAGGTCGTCTGCACCGTGGTTTCCACCAGCAAGAAGACCGACCCGGACATCGCTGCGATGATCGGTA CCTCGGCTGCCCTGGCCATTTCCGGCATTCCGTTCGAAGGCCCGATCGGCGCTGCCCGCGTTGCTTTCCATGAGAGCACCGGCTACCTGCTGAACCCGAC CTACGAGCAACTGGCTGCCTCGAGCCTGGACATGGTCGTTGCTGGTACCTCCGATGCCGTACTGATGGTTGAGTCGGAAGCCCAAGAGCTGACCGAAGAC CAGATGCTGGGCGCCGTACTGTTCGCCCACGACGAATTCCAGGCTGTGATCCAGGCAGTCAAGGAGCTGGCTGCAGAAGCCGGCAAGCCGACCTGGGACT GGAAACCTGCGGTTGCCAACACTGCACTGCTCAATGCCATCCGCGCCGAATTCGGCGAAGCGGTTTCGCAGGGTTACACCATCACCGTCAAGGCCGACCG TTATGCGCGCCTGGGTGAGCTGCGTGACCAGGCTGTGGCCAAGTTCTCCGGTGAAGAAGGCCAGCCTTCGGCGTCTGAAGTAAAAGACATCTTCGGCGAA ATCGAATACCGCACCGTTCGCGAGAACATCGTAAACGGCAAGCCACGCATCGATGGCCGCGACACCAAGACCGTGCGCCCGCTGAACATCGAAGTTGGCG TGCTGCCAAAAACTCACGGTTCGGCGCTGTTCACCCGTGGCGAAACCCAGGCCCTGGTCGTTGCCACGTTGGGTACTGCCCGTGACGCCCAACTGCTGGA CACCCTCGAAGGCGAGAAAAAAGACCCCTTCATGCTGCACTACAACTTCCCGCCGTTCTCGGTAGGTGAGTGTGGCCGCATGGGGGGTGCTGGCCGTCGT GAAATCGGCCACGGCCGCCTGGCCCGTCGTTCGGTTCAGGCCATGCTGCCTGCTGCTGACGTGTTCCCGTACACCATCCGTGTGGTGTCGGAAATCACCG AGTCCAACGGTTCCAGCTCCATGGCGTCGGTCTGCGGTGCCTCCCTGGCCCTGATGGACGCCGGTGTGCCGATGAAGGCGCCGGTTGCCGGTATCGCCAT GGGCCTGGTCAAGGAAGGCGAAAAATTCGCCATTCTGACCGACATCCTGGGCGACGAAGACCACCTGGGTGACATGGACTTCAAGGTAGCCGGTACCGCC AAAGGCGTTACTGCGCTGCAGATGGACATCAAGATCAACGGCATCACCGAAGAGATCATGGAAATCGCCCTGGGCCAGGCCCTGGAAGCGCGCCTGAATA TCCTCGGCCAGATGAACCAGATCATTGGCCAGTCGCGCACCGAGCTGTCGGCCAACGCCCCGACCATGATCGCGATGAAGATCGACACCGACAAAATCCG TGACGTCATCGGTAAAGGCGGCGCCACCATCCGCGCCATCTGCGAGGAGACCAAGGCTTCGATCGATATCGAAGACGACGGCTCGATCAAGATCTTCGGC GAAACCAAGGAAGCGGCAGAAGCTGCCAAACAGCGCGTCCTTGGTATCACGGCCGAGGCCGAGATCGGCAAGATCTACGTGGGCAAGGTTGAGCGCATCG TCGACTTCGGCGCGTTCGTGAACATCCTGCCTGGTAAGGACGGTCTGGTTCACATCTCGATGCTGAGCGATGCCCGCGTCGAGAAAGTGACCGACATCCT CAAGGAAGGCCAGGAAGTTGAAGTACTGGTACTGGACGTGGACAACCGCGGCCGTATCAAGCTGTCGATCAAAGACGTAGCTGCGGCGAAAGCTTCCGGC GTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATAGCGACAACGCGGTAGAAAAGGGCCCCGATCGGGGCCCTTTTTTTATGACCGCTGCGGAACCTTTAGCGGACTTGCATCTTGCATGCAGTTTTATCGT GCAGATTGCAGAATGCACGATACAGGCGATTCGTTACTTTATGTAAGTAATTGATATATAAGCAGAAATAACAATTCTGAAAGCTGGCACAGCCCCTGCA ACTAGTCTTGTATCTGCCGCCAGGACACAGGGCGCAGACCTTTCGAAAAACAGGAGTGACTCACATGAAGAAGTTCGCCATCGCTGCCGCTACTGCTACC GCTCTGACCCTGACCATGGCTAACGCCGCTTTCGCAGCCCAGGCCACTCAAGCGCCAATGATGCTTGCAGCTGGTGAGGCCACCAAAGCCAAAGAAGCTA CTTCCGACACCTGGATCACCACCAAGGTCAAAGCTGATCTGCTGACCGAAAAAGGCATTCCAGGTAGCGACATCAAAGTCGAAACCAACAAGGGTGTGGT
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| Amino Acid Sequence |
>polynucleotide phosphorylase/polyadenylase
MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIR PLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTSDAVLMVESEAQELTED QMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVANTALLNAIRAEFGEAVSQGYTITVKADRYARLGELRDQAVAKFSGEEGQPSASEVKDIFGE IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRR EIGHGRLARRSVQAMLPAADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDMDFKVAGTA KGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG ETKEAAEAAKQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASG V
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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