Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0103385
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva DSM 17004 H619DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGAAAATGGCAACAAGGGTTTCGAGGCCGTGGTCTGGGACCCTCGGCGCCAACGCCTGGTGATCGGCGAAGAGCGCCCGCCGCGGCTTTATGAATGGAGC AGCAACGGCCAAAGCCCGCTGAGTGGTGGCAAGACGGCGCTGCCCACCGACCCGCTGGACCTGCGCAACCTCTCGGCACTGGGCATCGACCCGCGCACCG GGCACTTGCTGGCGCTCTCCGCCGACTCGCACATGCTGCTGGAGCTGAACCACAAGGGCGAAAAGATCAGTTTCATGACTGTACTTGGAGGGTTCAACGG CCTGCAAAAAACCATCCCCCGTGCCGAAGGGGTGGCCATGGATGACCAGGGCACCCTGTACATCATCAGCGAACCCGCGCTGTTCTACCGGTTCAAGAAA GGCTGAACACGTGCTCGGCGATGGATAATCGAATGATGGCATTAAGCTTTATTTCAGTTGTCTGTGCTTAAATTCGCCATCCTTCGTCGAGCCTGCCCGC
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| DNA Sequence for Gene |
>H619_RS0103385
ATGCCCCGCTACCTGCGTTTGTCGTTGATCCCCGTGGCCCTGTGCCTGCTCGTGCTCGGTTGGGCAGGGCAGGAGCTGCGCCTGTTCGAGCGCGCCTGGT TCAACCTCAAGGCCTGGTGGCACCCTGCCGAACAGGGCATCGGCCTGGACCGTTACCGGGTAGCGGTGGAAGCCCGGCCGGTGGAGGGGCTGGACGACGA CCTTTCGGCGCTGACCTATGACCCGGACCGCAAAACCCTGTTTACCGTCACCAATGCCCGTTCCGAACTGATTGAGTTGTCGCTTGAGGGGCGCATTCTG CGCCGCGTGCCGCTGACCGGCTTTGGTGACCCTGAGGCGGTCGAGTACGTGGGGCCCAACAGCTACGTCATCACCGATGAACGCCAGCAACGGCTGATCC GCGTGCGGCTGCAGGATGACACCCCGTTCCTGGACGCGGCCGATGCCGAGCAGCTTACCTTGGGCATTGGCCTGAATGGCAACAAGGGCTTCGAAGGGCT GGCCTACGACTCTGCCGGCAAGCGCCTGTTCGTGGCCAAGGAGCGGGACCCGATGCTGATCTACGAGGTGCACGGGTTCCCCCACGACAACCCGCAGCAG CCTTATGCCGTGAACGTGGTGCAGGACAGCAAGCGCGATGCGCGGCTGTTTGTACGCGACCTGTCCAGCTTGCAGTTCGATGAACGCAGCGGGCACCTGC TGGCGCTGTCGGACGAGTCGCGCCTGCTGCTGGAACTGGATGTACAAGGCAAGCCGCTGAGCACCCTGTCTTTACGCAAGGGTGCCCACGGGCTGAAGGC GACGGTGCCGCAGGCGGAGGGCGTGGCGATGGACGACGCCGGCACCCTTTATATGGTCAGTGAGCCGAACCTGTTCTACGTGTTCAAGCTGCCGGCCCCA TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGGCGGGGCCCCGCCGCAGCCCCACCCAGGCTTATTCGGCTTTCAGGCTCTTCACGCCATCGGCGGTGCCCAGCAGCAGCAGGTCTGCCGGGCGAGCG GCGAACAGGCCATTGGTTACCACGCCGACGATGGCATTGATCTGTGCTTCCAGCTCGACCGGGTTGGTGATCTGCAGGTTGTGCACATCGAGGATCACGT TGCCGTTGTCGGTAACCACACCCTCACGGTACACCGGGTCGCCGCCCAGCTTCACCAACTGGCGCGCCACGTGGCTGCGGGCCATGGGGATGACCTCGAC CGGCAGCGGGAAAGCGCCCAGCACAGGCACCAGCTTGCTGCCATCGGCGATACAGATGAAGGTTTTGGCGACCGCCGCGACGATTTTCTCGCGGGTCAGG GCTGCGCCACCGCCTTTGATCAGGTTCAGGTGCTCGTCGCTTTCGTCGGCGCCGTCCACGTAGAACTCCAGCTCGCTGACGCTGTTCAGCTCGAATACCG
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| Amino Acid Sequence |
>DNA-binding protein
MPRYLRLSLIPVALCLLVLGWAGQELRLFERAWFNLKAWWHPAEQGIGLDRYRVAVEARPVEGLDDDLSALTYDPDRKTLFTVTNARSELIELSLEGRIL RRVPLTGFGDPEAVEYVGPNSYVITDERQQRLIRVRLQDDTPFLDAADAEQLTLGIGLNGNKGFEGLAYDSAGKRLFVAKERDPMLIYEVHGFPHDNPQQ PYAVNVVQDSKRDARLFVRDLSSLQFDERSGHLLALSDESRLLLELDVQGKPLSTLSLRKGAHGLKATVPQAEGVAMDDAGTLYMVSEPNLFYVFKLPAP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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