Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0101270
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva DSM 17004 H619DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGGCTGATGCCACCCGTGTGGTGGTGCTGGAGCATGCTGTGCGAGCATCGCTGCCAGGGGGTGCCTGGCTCGACCTTGCAGCAGGGCAGGCGGCCTTGC TCACCCGCAAGCGCATCGAGCCCCTGCAGGGCAGCCAGGCCTACCGCGCCGATTGGCTTGAGGGCCACCTCAGTGTGCTGGACGAGCCGCTGGACGCTGT AGTCGACGCCCTTCGCCCGTATCGCCCGGGTGTGATCCGCGTCAGCCCGCAGGTACGTCAGCTGCGCGTGCAGGGCGTATTCCCGCTGGATGACAGTGAG CGAACCCTGGCGGCTCTGGAGGAGACCATGCCTATCCGGGTGAGACGTTTCGGCGGGTGGGTGACGCTGATCGAAGCGCGGTGAACACGCAGGCAAAAAA CCTTGCCCCTGCTCGAATGAAAATTTTTATGATTCGTGTCCGCTTTTTGTATTTCGTCCCACCTCCCTCCTGACAACAGCAAACATTCAGGAGTCTTCAC
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| DNA Sequence for Gene |
>H619_RS0101270
GTGTTCAAACCCTGGCCCCTTGCCCTCGCCATCACCCTGGCCACCGCGCCCGCGGCCCACGTGTGGGCGCAAGGTTCTGTGCAACAGCAGCAGCGCTTCG ATCTACCGGCCGCCAGCCTGGCGCAAACCCTCAATGCCATCGCCCGCCAGGGCGGACAGGTGATGTCCCTTGACCCGGCGCTGGTCGCCGGCAAGCAGGC ACCGGCCATACAGGGCCAGATGAGCCCGTTGCAGGCCGTGCAGCAGGCGCTTGCCGGCAGCGGCCTGCAGGCCATCGTGACCGGTAGCGGCACCTTCAGC GTGGTGCCTGCGGTGGACGCGGAAGGCGCACTGGAACTCGGCGCCACCAACATCAACAGCCAGGGCCTGGGGGAGACCACCGAGTTCACAAATTCCTACA CCACTGGCGCCGTGACCATCGGCAAAACCCCGCAGACGCTCCGTGAGACGCCGCAGTCCGTGACTGTGGTGACACGCAAGTTGATGGATGACAAGAACCT GGTGTCCCTTGACCAGGTGATGGCCCAGACCACCGGCATCACCCGGGCCAACCGGGGCTACGGGAACCACCATTTCAGTTCTCGCGGCTTTGACCTGACC GACGACAGCTACATGGTCGACGGCGTGGCCGGTCAGGCGTACGCCTACACCGGGTGGATGATCCCGGACATGGCGGTGTTCGACAGGGTAGAGGTGCTGC GCGGTGCTGCCGGGCTGCTGGTTGGCGCGGGTAACCCGGGCGGCGCGGTCAACCTGGTGCGCAAACGCCCTACTGCCGACCCACGTTTTACGGTCATCAC CCGGGCGGGGTCGTGGGACAACTACCGCCTGGACCTGGACGCCAGCGGCAAGCTGAACCCTGAGGGCACCCTGCGCGGCCGCATGGTCGCCTCCTACGAG GACCGTGGTTACTTCACCGACGTGACCAAGTCCAAGCGCCCATTGCTGTATGGCATCGTCGAAGGCGACCTGAGCGACGCCACCACCGTTGCGCTGGGCT TGCGTCGGCAAACCTCGCGCATCGATGGCTACAGCGTGCTGGGCCTGCCGAACAACCCGGATGCCAGCAACCCGCACCTCAAGCGCTCGACGTTCCTGGG GCAGGACTGGGCCACCCTGCAGAGCCGCACCGATGAAGTGTTCGCCGACCTCAACCACCGTTTCAATGACAACTGGACCGGCAAGCTGGCGCTCTCCCAT TCCGAAAGCAGCTACAACCGCAGCGCCATCGAATGGGACGCCGAAGACACCCTCGCCTATGGCAGCCCCACCGGCCCCAAGGTAAACGACGTCAATTATC ACAAGTTCGACGTCACGGCCAATGCCGTCGACGGCCATGTGGACGGCGACTTCGAGGCCTTCGGCCTGCGCCATCAACTGTCGCTGGGGGCCAACTGGTC CAGGCGCAACATGAACGATAAAGAGGTCTCCCAGGCACTGGACAGCCCCATCCCGCTGAACGTCTACCGGCCTGATCACAATAACGTGCCAGAGCTGGCA CGCCAGGGGTGGGATTACAAGCAGGACACCTTCGATACGCGCTATGGCACCTACCTGAACGCCCGCCTGCACATGACCGAAGACCTGAGCCTGGTACTGG GTGGGCGGCTGAGCTGGTACAAGACCGAGACCTCCAGCGAAGACTCGAAAAGCACCAATGAACAGAAGCACGAGTTCACGCCCTTCGTGGGTGCTATCTA CGACCTGAACGACAAATGGTCGCTGTATGCCAGCTATGCGGACATCTTCATGCCCCAGGCCAGCTCCCGTACCGTCGACGGCAAGATGCTGGACCCGTCC GTAGGCTCCAACTACGAGACTGGCATCAAGGGCGAGCTGCTCGACAAACGCCTGAACGTGTCTTTTGCAATGTTCTACATCGAGCAAGAAAAAGTCGCCG CACGGGACTATGCCAACGATGGCAAGTGCGCAGGTGACATCGCTGGCCGCTGCTTCATCAACAGCGATGGCATCAGCCGCAGCAAAGGCTTCGAGGCCGA AGCCACGGGCGAGCTGCTGCCTGGCCTGCAGGTGGCTGCCGGTTATACCTACAACACCACGCAGTCGGAAAGCGGCGGCCCGATCTCGGGGCAAACGCCC AAGCACATGCTGCGGCTGAACACCAACTACACCCTGCCAGGGGAGTGGAGCCGCTTCAGCATCGGCGGCGGCGTGTCTGCCCAGTCCCACTACTACGATC CGCCGATTGAGGTCAGCAACAGCGGCCGCGCCATTTTCGATGCCCGGGCCGCCTACAAGCTGGACCCGCACTGGACGGTGGGCGTGGACGTGGAGAACCT GTTGGACCGCAAGTACTTCGACTCTACCGGTTACTGGACTCGCGGCACTACCTACGGCACACCGCGAAGCTACATGCTGACCTTGCGAGGCGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGGTGACCTTGATGGGCAAACGCGGTGAAGGCGCCCTGGAAATGAAAAAACCCTTGAGGCGCTGACCTCAAGGGTTTCAGGTGTTGCACAGGGCGTGC TTACACGTTGAAGCGGAAGTGCATCACGTCGCCGTCTTTGACGATGTAGTCCTTGCCTTCCAGGCGCCATTTACCGGCTTCCTTGGCACCGCTTTCACCT TTGAACTGGATGAAGTCGTCGTAGGCCACCACTTCGGCGCGGATGAAGCCCTTTTCGAAGTCGGTGTGGATCACGCCAGCAGCCTGGGGGGCAGTAGCGC CGACGCGAACGGTCCAGGCACGCACTTCCTGCACACCGGCAGTGAAGTAGGTTTGCAGGTTCAGCAGCTCGTAGCCGGCGCGGATCACGCGGTTCAGGCC AGGCTCTTCCAGGCCCAGGGCCTCCAGAAACATGTCCTTTTCTTCGCCGTCGTCCAGCTCGGCGATTTCAGCTTCGATCTTGTTGCACACCGGCACCACG
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| Amino Acid Sequence |
>ligand-gated channel
MFKPWPLALAITLATAPAAHVWAQGSVQQQQRFDLPAASLAQTLNAIARQGGQVMSLDPALVAGKQAPAIQGQMSPLQAVQQALAGSGLQAIVTGSGTFS VVPAVDAEGALELGATNINSQGLGETTEFTNSYTTGAVTIGKTPQTLRETPQSVTVVTRKLMDDKNLVSLDQVMAQTTGITRANRGYGNHHFSSRGFDLT DDSYMVDGVAGQAYAYTGWMIPDMAVFDRVEVLRGAAGLLVGAGNPGGAVNLVRKRPTADPRFTVITRAGSWDNYRLDLDASGKLNPEGTLRGRMVASYE DRGYFTDVTKSKRPLLYGIVEGDLSDATTVALGLRRQTSRIDGYSVLGLPNNPDASNPHLKRSTFLGQDWATLQSRTDEVFADLNHRFNDNWTGKLALSH SESSYNRSAIEWDAEDTLAYGSPTGPKVNDVNYHKFDVTANAVDGHVDGDFEAFGLRHQLSLGANWSRRNMNDKEVSQALDSPIPLNVYRPDHNNVPELA RQGWDYKQDTFDTRYGTYLNARLHMTEDLSLVLGGRLSWYKTETSSEDSKSTNEQKHEFTPFVGAIYDLNDKWSLYASYADIFMPQASSRTVDGKMLDPS VGSNYETGIKGELLDKRLNVSFAMFYIEQEKVAARDYANDGKCAGDIAGRCFINSDGISRSKGFEAEATGELLPGLQVAAGYTYNTTQSESGGPISGQTP KHMLRLNTNYTLPGEWSRFSIGGGVSAQSHYYDPPIEVSNSGRAIFDARAAYKLDPHWTVGVDVENLLDRKYFDSTGYWTRGTTYGTPRSYMLTLRGDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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