Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0100860
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva DSM 17004 H619DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAACACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGCCTGAGCCTGTTCTGGCACTTC CTGGACGTGGTCTGGATCTGCGTATTCACCGTCGTCTACCTGCTGGGAGTTCTGTAATGGCTAACGCACACGACACTCATCACGAGGGTGGCCACGGCAG CGTGAAGTCGTACATGATCGGCTTCGTCCTGTCGATCATCCTGACCGCGATTCCGTTCGGCCTGGTGATGTACCCAAGCCTGCCGAAGAACCTGACCGTT CTGATCGTTGTGGCCATGGCCGTGATCCAGGTTGTTGTACACCTTGTATACTTCCTGCACATGGACCGCTCGAAAGAGCAGCGCAACAACGTATCGACGT TCCTGTTCACCACGTTGGTGATCGCACTGCTGGTTGGCCTGTCGCTGTGGATCATGTTCAGCATCCACTTCGAAATGCTGGCCAAGTGAGGTAAGACTGC
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| DNA Sequence for Gene |
>H619_RS0100860
ATGTCCGTTAAGCACTTTATCCAAATCACCAAACCGGGGATCATTTTCGGTAACGTGCTTTCCGTGGCAGGCGGTTTCTTCCTTGCCGCGAAGGGCCATG TGGACTTCGCCCTGCTCCTGGCGGTCATTGTGGGCACTTCTCTGGTGGTGGCGTCCGGTTGTGTGTTCAACAACTGCATCGACCGCGACATCGACCAGAA GATGGAGCGCACCAAGAACCGCGTCATGGTCCAGGGCGGCATGTCGCTGCCCCTCGCGCTGATTTACGCCACCCTGCTCGGGGTGGCGGGTTTCAGCTTG CTGTACGTGCAAGCCAACCCTCTGTCCGCGTTCTGCGCGCTGGTTGGCTTTGTTGTGTACGTCGGCTTCTACAGCCTGTGGCTCAAGCGCAAGTCGGTGC ACGGCACCTTGGTTGGCAGCCTGTCCGGTGCCATGCCACCGGTGATCGGTTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTCACCCTGCTGGT GATGTTCAGCCTTTGGCAGATGCCACACAGCTTCGCCATCGCCATCTTCCGCTTCAAGGACTACAGCGCCGCCAACATTCCGGTACTGCCGGTGGCGCGT GGTGTGCTTGCGGCGAAGAAGCAGATCGTGCTGTACGTGCTGGCCTTCCTGCTGGCCACGTTGATGCTTACCCTGGGCGGCTACGCCGGCCTCGCTTATC TGGCTGTTGCAGCTGGCATGGGCCTGTACTGGCTGTACATGGCCTGGGGTGGCTACAAGGCTGAAGATGACAGCAAGTGGGCCCGCAAGGTATTTGGCTT CTCCATTCTCACCGTCATGGCCTTGAGCTTGATGATGGGGGTGGACAGCCAGACTGCGGCCGATGTGCTGATGACTTACGCACGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATTGCTGCCTGCTTTACGAAAAGCCCCGGCCTTTGCGCCGGGGTTTTTTATTTCAGTCATAAGCCGGTGGTTGCAATTACTCTGCCTTGCTTTTCCAAC AATGCATCTAAATAAATAATAAAAAACAGGGTATTGCCCTTTACAGGTCGCCCATATCGGCACTATCTTCTGTTTCAGGCCGCCCCATGCGGCCAACGTC GCTCGGACGGTTCCGGGCGCTTACGTCTCAGAGGAAACCATGGCCAACCCAGGTTCGCCGCGCCGTTTTGCGCGCATTGATCGTCTCCCCCCTTACGTCT TCAACATCACTGCCGAACTCAAGATGGCTGCCCGCCGCCGCGGCGAGGACATCATCGACCTCAGCATGGGCAACCCTGACGGTGCCACCCCCCCGCATAT CGTCGAGAAGCTGGTACAGGTCGCCCAGCGTGAGGACACCCATGGCTATTCCACCTCCCGCGGCATCCCGCGGCTGCGCCGGGCCATTTCCAACTGGTAC
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| Amino Acid Sequence |
>protoheme IX farnesyltransferase
MSVKHFIQITKPGIIFGNVLSVAGGFFLAAKGHVDFALLLAVIVGTSLVVASGCVFNNCIDRDIDQKMERTKNRVMVQGGMSLPLALIYATLLGVAGFSL LYVQANPLSAFCALVGFVVYVGFYSLWLKRKSVHGTLVGSLSGAMPPVIGYCAVSNSFDLAAVTLLVMFSLWQMPHSFAIAIFRFKDYSAANIPVLPVAR GVLAAKKQIVLYVLAFLLATLMLTLGGYAGLAYLAVAAGMGLYWLYMAWGGYKAEDDSKWARKVFGFSILTVMALSLMMGVDSQTAADVLMTYAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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