Pseudomonas sp. 35MFCvi1.1, F571_RS0128845
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 35MFCvi1.1 F571DRAFT_scaffold00018.18, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCATCGGTCGCAAGAAGAACTTCATCCTGTTCGCTGTCGGCTCCATGTCGATAGTCCTGGCCTACACCCAGTTGCCCATCGATAACAGCTTGATGCTCTG GCTCGGGTTCCCGCTGGGCTTTTTCGCCTCGGGCATCTTCGCCGGCATGGGAGCTTTTCTCACTGAGTTGTTTCCGACTCGCATGCGTGGTTCGGGCCAG GGCTTCTGCTACAACGCCGGACGCTCCATTGCCGCGCTGTTCCCGTTGTTCATCGGTGCGCTGAGCGACAAGCTGCCAATTGGTACGGGTATCGGAATCT TCGCAGCAGGTGCTTATGGCGTGGTGATTCTGGCGGCGCTGAGTCTGCCGGAAACCCGCGGTCGACAACTCGAGTCCTGAGCCTCGACACGTCTGAGCAA GACTGCTCAGACGTCGCTGATCCACTTCTTATCGACAACATCGGTCGCGAGCGGCAACGCCCCCGAGAGGGTTCGCTCGCGCCTGCAAAAGGAGCATGGC
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| DNA Sequence for Gene |
>F571_RS0128845
ATGAACGATTTCATTTCCACCCAGCGCGTGTACGTCCCGGTTGGCACATTGCTCGGCTTGAGCCTGTTCTGTGCACCGGCTGCCCAGGCGGATTTCATTG CCGACAGTAAAGGCAATCTCGAAGCGCGCAACTTCTATTTCAATCGCGATTTCCGCCAGGCAGGTTCGCGGGACAAGGCAGAGGAATGGGCGCAGGGTTT CCTGTTGCGGATGGAGTCCGGTTACACCGCCGGCACTCTGGGCTTTGGCCTGGATGCCTTGGGCATGGCCGGTTTCAAACTGGACTCCGGTGGGGGGACG GCGGGCACCAATCTGTTGCCGGCGGATTTGTCCGGTGGCTCCCAGAATAGCTACAGCAAATTGGGCATGACCGCCAAAGTGCGCTTGTCCAACAGCACCC TGAAGCTTGGGACTTTGCAAATCAAGGACCCGGTAGTGAACTCCAATGACACTCGTTTGTTGCCGTCAACCTTCAAGGGCGGCATGGTCAATGTGCAGGA AATCGACCGTTTGAAGCTCACAGCCGGTCAACTCACACAGATCAATGTTGTTGACTCCACCAATTATCAGAACATGACCGCCAACCGCATCGGCGGGCAA AGCGACAAGTTCCAGTTTGCCGGGGCTGACTATCAGTTCATGCCAAACCTGACTGCGCAGTACCGCTATGGCACGCTGGAGAATATCTACCAGCAGAACT ACCTCGGGCTGGTGCACTTGCTGGACCTGGGCAAGGGCCAGTCGCTCAAGAGCGACGTGCGCTATGCGCGCAGTACCGAAGACGGCAGCTTCCGTAAGCT CGATAACAAGGCCTTTGGCGCACTGTTTACCTACAGCCTTGGTGGCCATGCTCTGGGCTTCGGCTACCAACGCATGAGCGGCAACGATCCGTTTCCGTAT ATTGGGCGCAGCGATCCATTCCTGGTCAACTTCGTGCAGATCGGCGACTTCGCCAACATCGACGAGCATTCCTGGCAAGCACGCTACGACTACAACTTTG CCGCACTCGGTGTGCCGGGGCTGAGCTTTATGACCCGCTACATCTCTGGCGACAATGTGCAACGCGCAGCGCCAGGTGAAGGCAAGGAATGGGAGCGCAA CACCGATATCGCTTACGTGGTGCAGGACGGTACGCTGAAAGGGCTGGGCCTCAAATGGCGCAACGCGTCGGTGCGTTCGAACTTCGGTAATGATCTGGAT GAGAACCGCTTGATCCTCAGCTACACCCTGGCGCTTTGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGCCAGTCAGTTAAGGCGCAGCTTCTTTTGCCGGCTAGCTTCAGGTCATGCCTATGAACCCTTGCTACCGCGGAATACACAAGGCCGAGATCAATCACA AGCCAATGCGGCTGAGACAACTCAAAAGCCTGCTCAAGGAGCACCAAAGCGGACGAGCGCAGCCTCGATAAATCGTCGGAGTTTGGCTGTTCTCTGACGA TTGGCCGTGTAGAGCAAATGCATTTGTCGGCTCGGTGCTTCGTAATCAGCTAACAGTCGAACCAACTCACCGCTGCGCAACGCGGGCCCAAGAAAGTCTT CGGGACCAAGGACAATCCCGAACCCGTCCAGCGCTGCCGACAGCAGTGCTTTGCTCTCATTGACCTGCAATCGACTGACGACTTGTACCCGTTCAACTGC GGAGCCTTTGCAGAATACCCATTCGCGGTCGGCCGGCCGGGACCAATAGGCATACCCCAGACACTCATGGTTCTTCAGATCATCCGGTATTTGTGGCACT
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| Amino Acid Sequence |
>porin
MNDFISTQRVYVPVGTLLGLSLFCAPAAQADFIADSKGNLEARNFYFNRDFRQAGSRDKAEEWAQGFLLRMESGYTAGTLGFGLDALGMAGFKLDSGGGT AGTNLLPADLSGGSQNSYSKLGMTAKVRLSNSTLKLGTLQIKDPVVNSNDTRLLPSTFKGGMVNVQEIDRLKLTAGQLTQINVVDSTNYQNMTANRIGGQ SDKFQFAGADYQFMPNLTAQYRYGTLENIYQQNYLGLVHLLDLGKGQSLKSDVRYARSTEDGSFRKLDNKAFGALFTYSLGGHALGFGYQRMSGNDPFPY IGRSDPFLVNFVQIGDFANIDEHSWQARYDYNFAALGVPGLSFMTRYISGDNVQRAAPGEGKEWERNTDIAYVVQDGTLKGLGLKWRNASVRSNFGNDLD ENRLILSYTLALW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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