Pseudomonas sp. 35MFCvi1.1, F571_RS0126855
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 35MFCvi1.1 F571DRAFT_scaffold00014.14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGTTGGCGGCAAGCGGGTGGGGGCAGATGTGGAAGCGTTCAACCCGGTTTTCGACGTGACCCCGGCCGACCTGATCGATGCGATCGTCACCGAAAAAGG CATCGTCGAGCGCCCGGATACCGCGAAAATGGCTCAATTGATGTGCCGCAAGCGTCTGCATTAAATCATTCAGGCTGCACGAAATCGGTGTTTACAAGTG AAAAATACGGTTGAATGCCGGTTGATCACGCCTCTAAGCCCCTCTCGTCTCCTTCAAGCCTGTCACCGGTCAACTAACTATGCTCCATGCGCATCTGGGG GATAGGTGCGTGGCGGCTCTTGTGATAACATCCGGCGGTTTCCAGGGTAGCCTGATGTGGCTGCCTTTACTGCGCAGATCCATGGCATAACTCGTTGATT TGTCGTAAGTCGGTGCATGGCACTCAGTCTGTACCGGCGAGCTTCGTTCGTCCCATATGGATGTGACGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTC
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| DNA Sequence for Gene |
>F571_RS0126855
ATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAGCTGAAGCAGTCCTACCTCGACTACGCGATGAGCGTTATTGTCGGGCGGGCAC TGCCGGATGCGCGCGATGGCTTGAAGCCCGTGCACCGGCGTGTGCTGTTCGCGATGAGCGAGCTGGGCAACGACTTCAACAAGCCGTACAAGAAATCTGC CCGTGTTGTCGGTGACGTGATCGGTAAGTATCACCCGCACGGTGATACCGCGGTGTACGACACCATCGTTCGGATGGCGCAGCCATTCTCGCTGCGTTAC CTGCTGGTGGACGGTCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCCGCGGCCATGCGATACACCGAAGTACGCATGACCAAGCTGGCGCACGAGC TGCTGGCCGACCTGCATAAAGAAACCGTGGACTGGGTGCCGAACTACGACGGCACCGAAATGATCCCCGCGGTCATGCCGACCAAGATCCCCAACCTGCT GGTCAACGGCTCCAGCGGTATCGCCGTGGGCATGGCGACCAACATTCCGCCGCACAACCTCGGTGAAGTCATCGACGGTTGCCTGGCACTCATCGACAAT CCGGAGCTGACTGTCGATGAGCTGATGCAATACATCCCCGGTCCGGACTTCCCGACCGCCGCGATCATCAACGGTCGCGCCGGCATCATCGAAGCCTACC GCACCGGTCGCGGGCGCATTTACATGCGTGCCCGCTCGATCATCGAAGACATCGACAAGGTCGGTGGCCGTCAGCAGATCGTCATTACCGAACTCCCTTA CCAGCTGAACAAGGCCCGTCTGATCGAGAAGATCGCCGAGCTGGTCAAAGAGAAGAAGCTTGAAGGCATCACCGAGCTGCGCGACGAGTCCGACAAGGAC GGTATGCGCGTCGTGATCGAGCTGCGTCGCGGTGAAGTGCCTGAGGTGATTCTCAACAACCTCTACGCCCAGACTCAGCTGCAAAGCGTGTTCGGCATCA ACATCGTTGCGCTGATCGACGGCCGTCCGCGGATCCTCAACCTCAAGGATCTGCTGGAAGCCTTCGTTCGTCACCGTCGCGAAGTCGTGACCCGTCGTAC CGTGTTCGAGCTGCGTAAAGCGCGCGAACGTGGCCACATCCTGGAAGGTCAGGCGGTTGCCCTGTCGAACATCGACCCGGTCATCGCCCTGATCAAGGCT TCGCCGACCCCGTCGGAAGCCAAGGAAGCGCTGATCAGCACGCCGTGGGAGTCCTCCGCGGTGGTTGCAATGGTTGAACGTGCCGGTGCCGATTCGTGCC GTCCGGAAAACCTCGATCCACAATACGGCCTGCGCGACGGCAAGTACTTCCTGTCGCCAGAGCAGGCGCAAGCCATTCTGGAACTGCGTCTGCACCGCCT GACCGGTCTGGAGCACGAGAAGCTGCTGGCCGAGTATCAAGAGATCCTCAACCAGATCGGCGAGCTGATCCGCATCCTCAACAGCGCCACGCGCCTGATG GAAGTGATCCGCGAAGAGCTGGAAGTGATCCGTGCCGAGTACGGCGATGTGCGTCGCACCGAGATTCTCGATGCCCGTCTCGACCTGACCCTGGGCGACA TGATCCCGGAAGAAGAGCGCGTCGTGACCATTTCCCACGGTGGCTACGCCAAGACCCAGCCTTTGGCTGCGTACCAGGCTCAGCGTCGTGGCGGTAAAGG TAAATCGGCTACCGGCGTGAAGGATGAGGACTACATTGCTCACCTGCTGGTCGCCAACAGCCACACCACGCTGCTGCTGTTCTCCAGCAAAGGCAAAGTG TACTGGCTGAAAACCTACGAAATCCCGGAAGCCTCCCGCGCGGCCCGTGGTCGTCCGCTGGTCAACCTGCTGCCGCTGGACAGTGATGAATACATCACCA CCATGCTGCCGGTCGAGGAATACACCGAAGGTCACTTCATCTTCATGGCCACTGCCAAAGGCACCGTGAAGAAGACCCCGCTGGAATCCTTCAGCCGTCA GCGCAGCGTCGGTCTGATCGCGCTGGAGCTGGATGAAGGCGACGTGCTGATCTCTGCGGCCATTACCGATGGCGATCGCGAAGTCATGCTGTTCTCCGAC GGCGGCAAGGTGACTCGCTTCAAGGAAACCGACGTTCGCGCCATGGGCCGTACCGCTCGCGGTGTCCGCGGTATGCGTCTGCCGGAAGGCCAGAAGCTGA TTTCCATGTTGATCCCGGAAGAAGGCAGCCAGATCCTCACCGCTTCGGCGCGTGGTTTCGGCAAGCGCACCGCGATCACCGAGTTCCCTGAGTACAAGCG TGGCGGTCAGGGCGTTATCGCCATGGTCAGCAACGAGCGTAACGGTCGTCTGGTCGGCGCGGTCCAGGTGCTCGACGGCGAGGAAATCATGCTGATTTCC GACCAGGGTACGTTGGTTCGTACCCGCGTCGACGAAGTGTCCAGCCTGGGCCGTAACACCCAGGGTGTGACCCTGATCAAGCTGGCCAACGATGAAACGC TGGTGGGCCTGGAGCGGGTTCAGGAGCCGTCGGAAGTCGAAGGCGAAGAGTTGGAAGGCGAAGGGCTTGCAGGTGAAGAGGGTGCAGTGTTCGAGGGTGA GGTCGTGATCGACGATGTTGCCGACGACCAGCAACTCGACGCCGCCGCCGACGAAGAGCCGCAGGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGGCAAGCAGGGGGCGGATGAAGATTCGCCCCCTTGTTGTTTGTCCTCAGGGAGCTGTGGAATTGTTTTTTATGTAGGAGTTGTCGAGCGAAGCGATG CTGCGATCTCTTGATCTGGCTCTTGCTTTCGCTCAGCACTAAAAGATCGCAGCCTCGCTCTGCTCGACAGCTCCTACAGATTTATTGCGTGATACCACCA AATCAGAGCGAGATTGGATGTGAGCAAGAGAGCCTATAACTTCTGTGCCGGTCCTGCGGCGCTTCCCGAAGCTGTCCTGAAGCGCGCCCAGGCTGAACTC CTTGATTGGCACGGCAAGGGCCTGTCGGTCATGGAAATGAGCCATCGCAGCGATGAGTTCGTGTCCATTGCCACCAAGGCCGAGCAGGATCTGCGTGATC TGCTGAATATCCCCTCGAACTATAAAGTGCTGTTTCTGCAAGGTGGCGCGAGCCAGCAATTTGCTCAGATTCCGCTGAACCTGTTGCCGGAAAGCGGCAC
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| Amino Acid Sequence |
>DNA gyrase subunit A
MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRY LLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLALIDN PELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKD GMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKA SPTPSEAKEALISTPWESSAVVAMVERAGADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGELIRILNSATRLM EVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV YWLKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYTEGHFIFMATAKGTVKKTPLESFSRQRSVGLIALELDEGDVLISAAITDGDREVMLFSD GGKVTRFKETDVRAMGRTARGVRGMRLPEGQKLISMLIPEEGSQILTASARGFGKRTAITEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLIS DQGTLVRTRVDEVSSLGRNTQGVTLIKLANDETLVGLERVQEPSEVEGEELEGEGLAGEEGAVFEGEVVIDDVADDQQLDAAADEEPQE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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