Pseudomonas sp. 35MFCvi1.1, F571_RS0123090
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 35MFCvi1.1 F571DRAFT_scaffold00011.11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCAAGGAAGAAACTTTCGGTCCATTGGCGCCGCTGTTCCGTTTCAAAGACGAAGCCGACGTGATTGCGATGTCCAACGACACCGAGTTCGGTCTGGCCT CGTACTTCTATGCGCGTGACTTGGGTCGTGTGTTCCGTGTGGCTGAAGCCCTGGAATACGGCATGGTCGGCGTCAACACCGGGTTGATCTCCAACGAAGT CGCGCCGTTCGGCGGCATCAAGGCGTCGGGCCTGGGCCGTGAGGGCTCCAAGTACGGCATCGAAGATTACCTGGAAATCAAATACCTCTGCCTGGGCATC TAAGCCCGAAGGGATAGGCCCGGCAAGGCATTGCTTCAAACGCAAAGGGCACGAGAGCGCTGTCCCTTTGCGCGCTTCAAACGGAATTTTCTCTGTGGCC GGGAACGCTGTGGCAGTCGATCATCGCATGCTGCCGTAGTTGCTTCCCCGCCGCTTAATCCTTGAACCACGCCGACCGATGAGCGGCGAATGAGGAATGT
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| DNA Sequence for Gene |
>F571_RS0123090
ATGAGCAAGACTAACGCTGAGTTGATGGCCCGCCGTACCGCTGCCGTACCCCGTGGTGTTGGCCAGATTCACCCGATCTTCGCCGACCACGCGAAGAACG CCACCGTGACCGACGTTGAAGGTCGTGAGTTCATCGACTTCGCCGGCGGTATCGCCGTGCTGAACACCGGTCACTTGCACCCGAAAGTCATCGCCGCCGT GACTGCGCAGCTGAATAAGCTGACCCACACCTGCTTCCAGGTGCTGGCCTACGAGCCGTACGTGGAAGTGTGCGAAAAAATCAACGCCAAGGTGCCGGGT GATTTCGCCAAGAAAACCTTGCTGGTGACCACCGGCTCCGAAGCTGTGGAAAACTCCATCAAGATCGCCCGCGCCGCCACTGGCCGTGCCGGTGTGATCG CGTTCACCGGCGCTTACCACGGTCGCACCATGATGACCCTGGGCCTGACCGGTAAAGTCGTGCCTTACTCGGCCGGCATGGGCCTGATGCCAGGCGGCAT CTTCCGCGCGCTGTACCCGAACGAACTGCACGGTGTGAGCATCGACGATTCGATCGCCAGCATCGAGCGCATCTTCAAGAACGACGCCGAGCCGCGTGAC ATCGCCGCGATCATCATCGAGCCGGTGCAGGGTGAAGGCGGTTTCTACGTCGCGCCTAAAGAGTTCATGAAGCGTCTGCGCGCTTTGTGCGACCAGCACG GCATTCTGTTGATCGCTGACGAAGTGCAGACGGGCGCTGGCCGTACCGGCACCTTCTTCGCCATGGAGCAGATGGGCGTCGCCGCCGACCTGACCACCTT CGCCAAATCCATCGCTGGCGGCTTCCCGCTGGCCGGTGTGTGCGGCAAGGCCGAATACATGGACGCCATCGCTCCAGGCGGCTTGGGCGGCACTTACGCC GGTAGCCCGATCGCTTGCGCCGCGGCCCTGGCCGTGATGGAAGTGTTCGAAGAAGAGCATCTGCTGGACCGTTGCAAAGCGGTTGGCGAGCGTCTGGTGA CTGGTCTGAAAGCCATTCAGGCCAAATACCCGGTGATCGGCGACGTGCGTGCCCTGGGTGCGATGATCGCTGTCGAGCTGTTTGAAAACGGCGACAGCCA CAAGCCGAACCCGGCTGCTGTAGCCGCCGTTGTGGCCAAGGCTCGCGACAAGGGCCTGATCCTGCTGTCGTGCGGCACCTACGGCAACGTTCTGCGCGTG CTGGTACCGCTGACTGCGCCGGACGAGCAACTGGACAAAGGCCTGGCGATCATCGAAGAGTGCTTCGCCGAGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGTTTGTGAACTGATCGACAAAAAACCCGCTTCGGCGGGTTTTTTTATGCCTCTTGAAACACATCAGGAGCAATTGGGCTGTATCGAATGGCCAGCAT TGACTAAGGTGCAAGCATTGCCGTTGGAGTGTGCAGATGACTGCTGTGGTGTTACCCGCTGTACCGCGAGTGTTGATTGCCGAGGCGGACCCTTGGTCCC GCGACCTGCTCAAGCAGGTGTTGTTGAATGTGCGCTGCGACGCACGGCTGGACCTGTGTGCCGATGGCCAGGAAACCCTGCAGCTGTTGGCAGAGAACCC TTATGACCTGGTGATCGTCGACTGGGAGTTGCCCGGCGTCGATGGCCTGAATGTGTTGCGCAGTGTTCGTCAGCGCAAACGTAATCCGCCGTTGCCGTTC ATTCTGATGAGCAGCCGCAACGACAGCGCCAGCGTGCGTGAAGCCTTGCCCCTGGCGCCCACGGCGTACCTGACCAAACCCCTGGACATGGAAAACCTGA
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| Amino Acid Sequence |
>4-aminobutyrate aminotransferase
MSKTNAELMARRTAAVPRGVGQIHPIFADHAKNATVTDVEGREFIDFAGGIAVLNTGHLHPKVIAAVTAQLNKLTHTCFQVLAYEPYVEVCEKINAKVPG DFAKKTLLVTTGSEAVENSIKIARAATGRAGVIAFTGAYHGRTMMTLGLTGKVVPYSAGMGLMPGGIFRALYPNELHGVSIDDSIASIERIFKNDAEPRD IAAIIIEPVQGEGGFYVAPKEFMKRLRALCDQHGILLIADEVQTGAGRTGTFFAMEQMGVAADLTTFAKSIAGGFPLAGVCGKAEYMDAIAPGGLGGTYA GSPIACAAALAVMEVFEEEHLLDRCKAVGERLVTGLKAIQAKYPVIGDVRALGAMIAVELFENGDSHKPNPAAVAAVVAKARDKGLILLSCGTYGNVLRV LVPLTAPDEQLDKGLAIIEECFAEL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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