Pseudomonas sp. 35MFCvi1.1, F571_RS0119580
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 35MFCvi1.1 F571DRAFT_scaffold00008.8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACATCCTGCATGCCGGCCACGTGACTTACCTCGAACAGGCGCGCGCCCAGGGTGATCGCCTGATCGTGGCGGTCAATGACGATGCGTCGGTGAGCCGCT TGAAAGGGCCGGGTCGGCCGATCAACAGCGTCGACCGTCGCATGGCGGTACTGGCAGGTTTAGGCGCCGTCGATTGGGTGATCAGTTTCTCTGAAGGCAC CCCGGAAAACTTGCTGCGTGCGGTCAAGCCGGATGTACTGGTCAAGGGCGGTGATTACGGGGTCGACCAAGTGGTTGGCGCGGACATCGTCAACGCTTAC GGCGGGACGGTGAAAGTACTGGGGTTGGTGGAAAACAGCTCGACCACTGCTATCGTCGAGAAGATACGCAGCCGTTGAGGTGGGCGTCTCTCGTTTTGTA ATGTACGTGAACGGTCTTACCTTGGAGGTATAACCGTTTCCGTTGACGTTGGCCGGTACAAATCCGCGCTTACCTGTTGTTGTCTTGTGGTAATTATTTT
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| DNA Sequence for Gene |
>F571_RS0119580
ATGAAAGTCATGCTCCTGGTGATGGATGAGCAGCGTGTCATATTGGACCGCTTGTATGAAATCGTGCAGCAGAACTGCGCCGATTGTGTTGTCTATCGCC TGAGCAAACTGCAACAGATGAAACTCGGCCCGTTTCTGGCTTCGGTCAATTATCAGAACTTTGACCGGGTCGTGATTTTCTCCAGAGTCAAACGCCTCGC GCCGCAGGTCAGTGTTCTAAAATGTATTCCCGGGTTGATCTTTCTCGAACATGACGCCTATCAGAACTACATGCCCAACAGTAAGTACCTGAAAGTCTAT TCGCGTCTGTATCGCCGTCTCCCAAGCTCTCGCGTACTGGTTTCTGGCGCTGTTGTTGCGCGCAGGATGCAAGCTGAAAATATTGATGCAGTGTTCGTTT CAAAAGGATATGACGAGCAGATGCTGCATAACATGGACGGTGTTCGAGACATTCCGATCGGTTTTCTGGGCAGTCTGAAAAGTACCGAATATGCGCAGCG CAAGGCAGTCCTTGAATCGCTGGCTCGGCGTACCGGCATGTTGGTAACCCGGACCCAGTCAGGCGCCGAATATCTGGAAACACTCAATCGCATCAAGATT TTTGTCAGTGCCGATATAGGCATGGGCGAATTCATGATCAAGAACTTTGAAGCCATGGCCTGTGGTTGTGTACTGCTGGCCTGGAGTCAAGGTGAAGAAG ATGAGTTGTTGGGCTTTCAGGATATGCACAACACCGTGTTCTATCGCTCCGAAGAGGAGGCAGTGGAAAAACTCAAGCTGTTGGAGAGTGACCCTGCGTT AGCGTCTCGTATCGCCAGTAACGGGCAGGCGTTCGCTGAGAGCCAGTATTCCTTTGCACGTGTGGGACGTACCCTCGCTGTTGAAATCCAGCGTGAAATG CGTCCATGGCGACCGCCTTCGGCATTCACTCGCCTGTGGGTCAAGTTACGTCATGGGATGAAGGTTGCGGAGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCATGGAAGGTCAGAAGCCTCAAACCTGTGAACAATTGGCGCTGGATGCGATGCCTGGTGGGCACCAGTCCGTTATGGATGGACTGCCGCAGGAGCTGA AAGACTGTCTGAGCTCAGCCGCTCGCGTTGTGCTTATAGCTAATAATCCGGCTATTACGTCGGCCGATTTCCAGGCGCTGAATATTGGCATCGATGACGT CGTGGTCAGCTTCAATACCTGTGTTAAAGCAGCATTGCTTGGCCCGCAGAGCGTGAATGTATTCGTGCATGGTTTCAATGCGCCGGACGCCTACTTCTTC GGCCTTCCCTATGGAGCTGAAGTGCAGCGACTTTTCCAACACGCTGGCGAGCGTTGCTTCACGATGCTGGTGGGAAGTACGCAGGCGATGTGCCCTCTGC CGCGAGTAGCTCTTTTTTGGGAGCGTATTCCGTTACCGGCGCTGTGGAACTACCCGGTCGATCGACCGGGAGGCAAACGTTATGTTGGACCTTCCACCGG
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| Amino Acid Sequence |
>protein Ssg
MKVMLLVMDEQRVILDRLYEIVQQNCADCVVYRLSKLQQMKLGPFLASVNYQNFDRVVIFSRVKRLAPQVSVLKCIPGLIFLEHDAYQNYMPNSKYLKVY SRLYRRLPSSRVLVSGAVVARRMQAENIDAVFVSKGYDEQMLHNMDGVRDIPIGFLGSLKSTEYAQRKAVLESLARRTGMLVTRTQSGAEYLETLNRIKI FVSADIGMGEFMIKNFEAMACGCVLLAWSQGEEDELLGFQDMHNTVFYRSEEEAVEKLKLLESDPALASRIASNGQAFAESQYSFARVGRTLAVEIQREM RPWRPPSAFTRLWVKLRHGMKVAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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