Pseudomonas sp. 35MFCvi1.1, F571_RS0119435
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 35MFCvi1.1 F571DRAFT_scaffold00008.8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AACGCATGACCGCGTTCATCTGCGATTACCTGCGCATCATGTCCTCCGGCAACATGGCCCCCCATGAGCTGGAAGGCCTGTTCGACATGGAACTCTACAG CCTCAAGGAAGACCTCGAGCACCCGTCCCACGCGGTGAACGGCATCGCCGACGCCATGCCCGGTTTCGGTATCGTCGCGGCGGTATTGGGGATCGTGGTG ACCATGGCATCCCTGGGCGAAGGCGACCAGAAGTCCATCGGTCTGCACGTGGGGGCGGCACTGGTCGGTACCTTCTTCGGTATTCTCGCGGCCTACGGTT TCTTTGGTCCGCTGGCCCACTCCCTGGCTCACGATGCCAAGGAAGAACTGAACACCTACGAAGCCATCAAGGCTTCGCTGGTGGCTTCGGCTTCCGGGAT GCCGCCGTCGCTGGCGGTGGAGTTCGGTCGCAAGGTTCTGTACCCGGCGCACCGTCCTAGCTTCGCTGAGCTGGAACAAGCGGTTCGCGGTCGTTAAGTC
|
|
| DNA Sequence for Gene |
>F571_RS0119435
ATGGAAAATAACCAGCCGATAATCATCAAGCGCGTCAAGCGCATCGCCGGAGGGCATCACGGGGGCGCCTGGAAAATCGCCTTCGCGGACTTCGCGACGG CGATGATGGCGTTCTTCCTGGTGTTGTGGCTGCTGTCCACCGCGACGCCTGAACAGAAGATCGCCATCGCCGGTTACTTCAAGGACCCGGTCGGGTTTTC CGAAAGCGGTACACCGTACATCATCGACCTGGGCGGCACGCCGACCCTGGCGCCGGAGAACACCCTCAACCCGGAGGTGAAATCTCAGCCGCAGCCAGAC AAGGTGACCATCGACGCCGAGCAGGTTGAAGGCATGGCCGAGCAAGTCGAGAAGGAACGCCTGGAGTTGTTACTGCAAGAGTTGCAGAACAAGGTCAATG AAAACCCGCAATTGCAGAAATTCAAGGACCAGATCCTCTTCGAGATCACCCAGGACGGTTTGCGCATCCAGATCATGGACGCCGAAAACCGCCCGATGTT CGACTCCGGCAGTGCGCGCCTGAAGCCGTACTTCGAAGACATTCTGCTGGCCATGGCCGACACCATCAAAGCGGTGCCGAACAAAATCAGCATCAGCGGC CACACCGATGCCAAGCCGTACTCGGGCACTGGCGATTTCGGCAACTGGGAACTCTCGGCCAACCGCGCCAACGCGGCTCGTCGTGCATTGGTCGCCGGCA GTTATCCGGACGCCCAGGTCGCGCGAGTCGTCGGTTATGCCTCGTCGGCGCTGTTCGACAGGGAGAACCCGTTCAATCCGGTCAACCGCCGGATCGACAT CGTGGTGCTGACCAAGAAAGCCCAGCGCGCCATCGAAGGTGAACAAGGTGCCGAACCGGCGCCAGCGCCGACGCAAGGGCAGGGTGGCCCGGGCGAAGTG CATGCGCCGCCAGCCGATCCGAACGCATTGCCGGCGGATAAGGAACCGCTGCCGGCACACGAACTTCGTGAGCGTTTGAATCTGTTTGATAATCCGGCGC CGAAGCCGGGCGAACCGCCCAAACCCGCTGTACCGCCCAAGCAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCTGCAGAAAAGCCACCATGAGTGGCTTTTCTGTTTCTGGCTGCGTCACTGCAGCGTCGCACTGACTCGACTCACTGCAAGTTTGTTTTCGGAATCATGG AAGATCAGTAATGGAAAGACTCAAGTCCTATTTTCAGCAGCATGGCAATGCACCCTTCAAGTTTGGTGAAGGGCGGGTCAGTGGCTACATCTCAGCCACG CTCGGGCTATTGAGCCTGCTGGCGGTATTGTGCTTTCTCTTTCCCGAATGGCTGACCACCGCCGAACTGCGCAAGGTGTACGACGAACAGTTTGCGCGCA CCACGCTATTGCTTGGGCTGGTACTGTCTTTCAGCCTGGGCACCCTGAATATCCTGCTCAACAAGCGAAAGCGCTTGGGGATTACCGGACTTGTCACCTC GGGGCTGGCGGTGTTTCTCGGCGGCACCAATGTGCAGATCAGCTCGATTGGGCAGACACCGTACTCGCTGGGGCTGGACTGGTTCGTCCTGGCTCTGCTG
|
|
| Amino Acid Sequence |
>flagellar motor protein MotB
MENNQPIIIKRVKRIAGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYFKDPVGFSESGTPYIIDLGGTPTLAPENTLNPEVKSQPQPD KVTIDAEQVEGMAEQVEKERLELLLQELQNKVNENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLAMADTIKAVPNKISISG HTDAKPYSGTGDFGNWELSANRANAARRALVAGSYPDAQVARVVGYASSALFDRENPFNPVNRRIDIVVLTKKAQRAIEGEQGAEPAPAPTQGQGGPGEV HAPPADPNALPADKEPLPAHELRERLNLFDNPAPKPGEPPKPAVPPKQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|