Pseudomonas sp. 35MFCvi1.1, F571_RS0113455
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 35MFCvi1.1 F571DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATATCAATGCCGCATTCCCCAAGCCCAAGGGCTAACCACGAGATTCAAGCGCCATGACTTACCGCATCAATGAGTTCCAGTTCCAGCTGCCGGCAGGCGA GCTGCAAGACGCGACGATCAACATCCTCAAGTTCCCCGAACTGGGCACCTCGCTGATTGTCAGCCGCAGCTTGCTGGCCGAGGGCGAAACCCTGCAAAGC AACTTCGACGACCAGCTCAAGCGCCTGGAAAAACAAGTGCAGGACTTGCGTTTTCAACCGGGCGTCGCCGTGCGCCTGGGCACCAGCCAGGAGGTCGAAG GCATCGAGTTGCGCAGCCAGTTCAACAAGGGCAACGACAAAGTCTTCCAATATCAGTTGGCGCTGGTATTGCCCGGCACCCGCAAAATGCTCGCCCTGAG CTACGTGAAGGCGGAAAAACTCGGCGATGCCGAAGCCGCGCATTGGGCAACCATCAAGAGTTCGCTGTTGTTCGACGTTCCGGCCTGATGAGCACCCTGC
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| DNA Sequence for Gene |
>F571_RS0113455
ATGTCTGACGCACTCTGGGCCGCCCGGCTGGGCGATGCCCTCGACCACACCTCGATGATGGCCGACATCCTCGGCGGCGTGCTGGAGGTGGCAGCGAACA TCGCGATCACCGCGCTGGCGACGGCTGCCGTGGTGGCGGCCACGGGCATCACCGTCGCCACCGGCGGCCTCGGCTGCTTTCTGCTCGGCGCGGTGGTGGG CACCATCGTCGGCCTTGCCATGAGCAAGACCGGGGCCGACAAGGGCCTGAGCAACCTGTGCGAGAGCTTCAGCAATGCGCTGTTCCCGCCCACGGTGCAG GCGACGATTCTCACCGGTTCCACCAACACCCTGACCAACAACATTCCCGCCGCCCGGGCCGCCGGGGCGATTCCGTCCCATGTCGCGCCGGCCGGCACCG AGCTGGAGGCACCCGAGCCCGAAGCCGAGCCCAGCTATCTGGACATGGCCGAGAGCTTCTTCTCCCAGATGTGGCGCCCCACCGTCGCCACTCCGGCGCC CGGCGCCGTGCCCAAGCCGCTGGACCTGCTCGTCTGCATGAAGCATCCGCCGATGCCGCCGCAGTTCATGGCCGAGGGCTCGGACAAGGTCACCATCAAC GGCCAGCCCGCCGTGCGCAGCGGCGACCGTAGCACCTGCGATGCCAAGGTCGTATCGTCCGGGCTGATCTCATCGAACGTGACCATTGGTGGCGGTTCCG TGGTGGTGCGTGAGATCCGCAGCGGCAAGACCCCGGGCGTGGGGCTGGCGGTCACCGCGTTGCTGATGCTCAAGGGCGGCAAAGGCAAGTTCTTCAGCAA ACTGCCGTGCATGCTGATCGGCGGCGCGACGTCGATGGCTGTCAGCAGCGCCATGGGCGCCATGGCCAACGCCGCCATGGGTTCGTCGAACCCGGTGCAT GCTGCGACCGGGGCCAAGGTGCTGGGTGGGGACGAAGAGCTGGATTTCGTGCTGCCGGGCATCTTGCCGATCGATTGGCAGCGCTTCTACAACAGCCGCG ACGAACGACGCGACGGGCTGTTCGGCGCCGGTTGGAGCGTGTCCTACGAGGTGCGGGTTGAAATCCTGCCTCACCCGGAGGGCGGGGAAACGCTGGTGTA CACCGATGAGCAGGGCCGGCGCATCGATATGGGGTCGATTCCTCTGGGCGGCGCGGTGTTCAGTGCGGGTGAAGGGCTGAGTGTTCGGCGGCATCGCAAT GGGGAATTGTTGATTGAAAGCGATGACGGGTTGTATCGGCTGTTCGACGGTACACCCGGTAATCCGTCGTTGTTGCGCCTGAACCAGCTCGGCGACCGCA ATGACAACCGCATCCACCTCGACTATGACGACGGCGGGCAGCTTGTTCGGCTGCGGGACACCTTCGATCTGGTGCAGGTCGAGCTGATTCAAGAAGACCG TCGCGTGGCTCGGGTGGAACGCCTGTACCCCGACCAACACCGCGAAGTACTCGTCAGTTACGGCTATGACGCAGCCGGCAACCTGGCCGAAGTGCGCGAC GCCACCGGCCAGGTGCAACGGCGCTTCGCCTACGACGCCGGGCGGCGTATGGTTGAGCATCAGTTGCCCACGGGGCTGCGGTGTTTCTATGAATGGGCTT ATATCGAGGAAAAAGAATGGCGCGTGGTCGGGCACTGGACCGACGAAGGCGACACTTACCAGTTCGACTATGACCTGAACGCCGGTGCAACGCGCATCAC CGACGGCTCACAGCGCATCAGTACTCGCCACTGGAACACCCAGCACCAGATCACCGAGTACACCGACAACCTCGGCCAGACCTGGCAGTTCGAGTGGAAC GACGAACGCCAATTGCTCAGTGCCACCGACCCGCTGGGCGGGCGCTATGAATACAGCTACGACGACGCCGGCAACCTGATCGGCGAAACCGACCCGCTGG GCCGCAGTGAATCGACCCTATGGCTCGAGCACTGGGCCTTGCCGCTGGTGGAAACCGATACCGCGGGCAACAGTTGGCAATATCGCTACGATCAGCGCGG CAACTGCATCGCCGAAACCGATCCGCTGGGCCATGTAACGCGGTACCGCTACGACACCCAGGGCCAGGTCGTCGAGATCATCGACGCCACCGGCAAAAGC AAAAGGCTGCGCTGGAACCCGTTCGGCCAACTGGTCGAACACATCGATTGCTCGGGTTATCCGACGCGGTTCAGCTATGACAACCGGGGCTATCTGCAAA CGATCACCGATGCCCTCGGCGAACGCACCCAATTCAGTTACGACGCCCAGGGACGGTTGCTCAGCAGCCAATTGCCGGACGGCCGCACCGAGCAGTATCA GCGCGACGTCAGTGGCCAGTTGACCGGCTATACCGACCCGGCCGGGCACACCACGCTCTACCAACACAACCGTCGCGGCCAGGTCCGTCAACGCACCGAC GCCCATGGCCGGCAGGTGCAGTTCGGGTACGACCGCTATGGGCGGCTGCAGGCGCTGACCAACGAAAATGGCGAGAGTTATCGGTTTGCCTGGGATGCTG GGGATCGACTGATTGAACAACAGGATCTGGATGGCAGTGCCAAGCGCTACACCTATGACCTGCTGGATAACGTCGCGGCGGTCACGGCTGTTCCGGCGCC TTATGGCAACGGCCTGGCCGTCGTCCCCGAGTCGCCTCCCGCTCCCATCGTTCATCGGCTGGAACGGGATGCCGTTGGCCGGCTGATCGCCAAAATCACC GACGATGGCCGCACCGACTACTCCTACGACTCACTGGACCAGCTCACCGCTGTCACCTTCACCGACCACCACGGCAACGCACAAACCTTGAGCTTCGCCT ATGACGCCCTCGGTCAATTGCTCGAAGAACAAAGCGCGGCCGGCAACCTGCACTACCACTACGACGAACTCGGCAATCTCATCCAGACCCAACTGCCCGA CGGCCGCTGGCTCAATCGCCTGTACTACGGCAGCGGCCACCTGCACCAGATCAACCTCGACGGCCAGGTCATCAGCGACTTCGAACGCGACCGCCTGCAC CGCGAAGTGCTGCGCACCCAAGGCCAGATCAGCACTCGTAGCGAATACGACCGCAGCGGGCGTTTACGCTCACGCCAACGCCGACACAGCAGCCAGCCAT CGCTGATGCCGGCAGCGGTGCAGAAACATTTCGAGTACGACCCCGCCGACAACCTGATCGGCAAACTCGACCAGCAACCCGCCACGCAACACCGCCAACT GCTGCACTACGACGCCACCGGCCGCATCATCGCCAGCCAGGACAGCCTGCACGGCCAGCGCGAAACCTTCGCCTACGACGCCGCCGCCAACCTGCTGGAT GGCCCACAAACCGGCGCCGGGCTGGTGGTGCACAACAAACTGCTGACCTATCAGGACAAGCGTTACCGCTACGACGCCTTTGGCCGGATGATCGAAAAAC GCAGCGCTCAACGGGGTCTGCAGCGCTTCGCTTACGACGCCGAAAGCCGGTTGATTGAAGTGCGCAATGAAAACGGCAGCGTGGTCAGAATGACCTACGA CCCACTGGGCCGGCGCATCGAAAAAACCGTACACGACACCAACGGCTACCCCCTCGGCGAAACCCGCTTCACCTGGGACGGCCTGCGCCTGTTGCAGGAA CATCGCCATCAGCGGACCAGCCTCTACCTCTACGAAGACGAAGGCTACGAACCCTTGGCCCGGGTCGACGGCACCGGCCCACTGCAAAAAATCCGCTACT ACCACAACGACCTCAACGGCCTGCCGGAACAACTCACCGAAGCGGACGGCCACAACGTCTGGCAGGCAACTTATCGGGTGTGGGGCAACACGTTAGAAGA GGTGCGCGAGCCGTATTACATTGAAGAGCAGAACCTGCGGTTTCAGGGGCAGTACTTGGACCGGGAGACGGGGCTGCATTTCAATACGTTCAGGTTTTAT GATCCGGATGTGGGGCGGTTTACTACGCCGGATCCGATTGGGTTGGCGGGGGGATTCAACCTCTATCAATACGCACCGAATCCGATTGGGTGGGTGGATC CGTGGGGGTGGGAAGTTTGTCGACTCAGCGCCTCACAGAAGAGAGCGATGGGGCCTGCACCTAAGGGTATGGTAAAGCCGCATTACCATCATATCGTCCG CGAAAAAGCTCCGAAAAGCTGGAAAGCTCAAAATCAAAAGTACATTACCGACTCGCAAAAAATTCTGGCCAAACACAAAATTGGCCTAAACAACGACCCG CGCAACTTCACCTGGGCCCAAAATGGTGGAGGGAATCACTCGATAGCCAGCGCCAAAAAAGTCTATGAAATACTACAGAAAGCAGACGTCGGCGGGCTGG CCAGTGTCCAAAACGCATTGAAAAACATGGGTGCTCAAATGACAAAAGGTATTTTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGAACAACCCAGAAGAAATTTATGAAAAGAACATTAAAACTTTATTAGCCATTCACGCAGACATCGCGTCGGGAAATGCAGCCTCACTAAAAAAGTGCC TAGAGAAAAATTCCGTTCTATTGCACTTGCCCATGTATGGTCTTGATGGGCATGAAACCCTGCTGCACATGGCCGCTGAACAGGGGCAAACCGAAATTTG CCGCTTATTGGTGTCTTTAGGTATTGCGCTGGACCAGCCTGCCGCCAGTTCCGGCAATAGCACGCCACTTGCCGCAGCCGCTGGCAATGGACACTTACAA ACATGCCAATGGTTTCTTGAGGCCGGTGCTTTGGTGGATGGGTGGCCTAACAGCATAACCACCCCGCTGATTGACGCGATTACCTTTGGGCATCAGGACG TCGTCAATCTTCTTGTAGAACACCATGCCAACATCAATCGACTGCACACCAGACTGAATACTGCGCCATTGGACATCGCCAACACCTGGGGATTTACAGA
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| Amino Acid Sequence |
>type IV secretion protein Rhs
MSDALWAARLGDALDHTSMMADILGGVLEVAANIAITALATAAVVAATGITVATGGLGCFLLGAVVGTIVGLAMSKTGADKGLSNLCESFSNALFPPTVQ ATILTGSTNTLTNNIPAARAAGAIPSHVAPAGTELEAPEPEAEPSYLDMAESFFSQMWRPTVATPAPGAVPKPLDLLVCMKHPPMPPQFMAEGSDKVTIN GQPAVRSGDRSTCDAKVVSSGLISSNVTIGGGSVVVREIRSGKTPGVGLAVTALLMLKGGKGKFFSKLPCMLIGGATSMAVSSAMGAMANAAMGSSNPVH AATGAKVLGGDEELDFVLPGILPIDWQRFYNSRDERRDGLFGAGWSVSYEVRVEILPHPEGGETLVYTDEQGRRIDMGSIPLGGAVFSAGEGLSVRRHRN GELLIESDDGLYRLFDGTPGNPSLLRLNQLGDRNDNRIHLDYDDGGQLVRLRDTFDLVQVELIQEDRRVARVERLYPDQHREVLVSYGYDAAGNLAEVRD ATGQVQRRFAYDAGRRMVEHQLPTGLRCFYEWAYIEEKEWRVVGHWTDEGDTYQFDYDLNAGATRITDGSQRISTRHWNTQHQITEYTDNLGQTWQFEWN DERQLLSATDPLGGRYEYSYDDAGNLIGETDPLGRSESTLWLEHWALPLVETDTAGNSWQYRYDQRGNCIAETDPLGHVTRYRYDTQGQVVEIIDATGKS KRLRWNPFGQLVEHIDCSGYPTRFSYDNRGYLQTITDALGERTQFSYDAQGRLLSSQLPDGRTEQYQRDVSGQLTGYTDPAGHTTLYQHNRRGQVRQRTD AHGRQVQFGYDRYGRLQALTNENGESYRFAWDAGDRLIEQQDLDGSAKRYTYDLLDNVAAVTAVPAPYGNGLAVVPESPPAPIVHRLERDAVGRLIAKIT DDGRTDYSYDSLDQLTAVTFTDHHGNAQTLSFAYDALGQLLEEQSAAGNLHYHYDELGNLIQTQLPDGRWLNRLYYGSGHLHQINLDGQVISDFERDRLH REVLRTQGQISTRSEYDRSGRLRSRQRRHSSQPSLMPAAVQKHFEYDPADNLIGKLDQQPATQHRQLLHYDATGRIIASQDSLHGQRETFAYDAAANLLD GPQTGAGLVVHNKLLTYQDKRYRYDAFGRMIEKRSAQRGLQRFAYDAESRLIEVRNENGSVVRMTYDPLGRRIEKTVHDTNGYPLGETRFTWDGLRLLQE HRHQRTSLYLYEDEGYEPLARVDGTGPLQKIRYYHNDLNGLPEQLTEADGHNVWQATYRVWGNTLEEVREPYYIEEQNLRFQGQYLDRETGLHFNTFRFY DPDVGRFTTPDPIGLAGGFNLYQYAPNPIGWVDPWGWEVCRLSASQKRAMGPAPKGMVKPHYHHIVREKAPKSWKAQNQKYITDSQKILAKHKIGLNNDP RNFTWAQNGGGNHSIASAKKVYEILQKADVGGLASVQNALKNMGAQMTKGIF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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