Pseudomonas sp. 35MFCvi1.1, F571_RS0113395
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 35MFCvi1.1 F571DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGGCCAATTGCCATTACTCCCTGATCCATGGATTTTTCAGAGCATTGACCAGGGGTAATCTTGTGATAACTAGTGATAGTCAAACACAGCGGCATCTTG CCTCCTTGCTGCACACTTTGCGCGCCGGCGAATGAAGGGATCAATCCCCGCGAAGCTCGCCGACAAACCTTGCAAACAACCTAAAAAACAGCTTTTTACC AGCACATTTGCTGATCTTAACCGGTTTACGTGACAAAAAATCTGCGTCAGTACCTTCTTGGACCTACCGGTCGCGAGGGTTGTTAAGCACCTCACATCTG TCACACAGGAGAAATAGCTTACCTTGACAAGCCATAAGTACTACACCAAAAATGAACAACTTTCTTGAATACAGTGATGGCACTTTAAGATCACAGAGGA TCCAAAGGGCCATTACACACAAGGAAACATGCGAAGTTCCACTTGGAACTAACGTGTGAACTGCCCGTTTCTGTCGCGGGCGATAGGGAGATCAATTTCA
|
|
| DNA Sequence for Gene |
>F571_RS0113395
GTGGAAGTGCCTTTGCTGCTCGCCGCCGTTTCCGCGACTTCGCCTTGTGGCGAAGATCTGGAATACGACGCTGACTTTTTGCGCCTGGAACGCGATTCCC AAGGCCAGCCCGAGCGCAGCATGGGCGATTCGATATTGCCTGCCGAACCGCCTGAATGGCGCAGCATCCAGCAGCAAAGCCTGGATTTGTTGCAACGCAG CAAAGACCTGCGTATCACCCATTTCCTTTTGCAAAGCTCCCTTGCCCTGGAAGGTGTCCCCGGCCTGGCCCGCGTCCTGACGCTGATCAGCGAATTGCTC AAGCAATACTGGGCCGACCTGCATCCACGCCTGGATGCCGAAGACGACAACGATCCCACCGTGCGCATCAATGCCCTCGCCGGCCTGGCGTCCGATGCCA CCATTCGCCTGCTGCGCGAAAGTATCCTGGCCCGTTCGCGAACCTTTGGCGCTGTCAGCCTGCGCGCCGCCGCCAACGCCAGCGGTCTGCAAAGCTTCCC TGACGAAAACCTCGGCGCCGAACAACTCGCCGGAGCGTTCCTCGACAGCGATCCCGAACAGTTGGACATCATCCGCAAAGCCTTGCACGAGGCCCGTAGC GCCGCCGAGACCATCGAGCAACACGTCAGCGAACAAGTCGGCTCCGCCCAGGGCGTTGACCTTGGCCCATTGAAGCAACCGCTCAAAATGGCCTTGCAGA TTCTCGGCCAGTTCGCCCCGCAGAGCGGCGACAGCCCCCAGCCCGATGCCATCAGCGACGACAGTGCCGCGCCGGTTGAATACCCCACCGCGCCAAGCGC GCCGCGCAACGCCAACGCTAACGCCAGCAGCGGCGAAATCAACAACCGTGACGACGTGCTGCGCAGCCTGGACCGGATTCTTGCGTATTACACCCGTCAC GAGCCCTCCAGCCCCCTGCCGGTGCTGTTGAATCGGGCAAAGAATCTGGTGCACGCCGACTTCGCGGCGATCGTGCGCAACCTGATTCCCGACGGCATCA GCCAATTTGAAAACCTGCGCGGACCAGACAGCGAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AAAGCGTACGGATCACGCAGTCACGTCACCGGCACCGCCGATGACGCCAACACCGTCGCTTGAGCGACCAGGAGCAGCAACGTGGCGAAGCAAAGTTCTC AGAAATTCATCGCGCGCAACCGTGCGCCTCGAGTGCAGATCGAGTACGACGTCGAGCTTTACGGCGCCGAGAAAAAGGTCCAGTTGCCCTTCGTAATGGG CGTTATGGCTGACCTCGCCGGCAAGCCGGCCGAGCCTCTGGCACCTGTGGCCGATCGCAAGTTCCTTGAAGTGGATGTGGACAACTTCGACTCCCGCCTC AAGGCCATGCAGCCACGCGTTGCGTTCCACGTGCCCAACGAGCTGACCGGCGAAGGCAACCTGAGCCTGGACATCACCTTTGAAAGCATGGACGACTTCA GCCCGGCCGCCGTGGCGCGCAAGGTCGACTCGCTGAACAAACTGCTCGAAGCGCGCACTCAATTGGCCAACCTGCTGACCTACATGGACGGCAAGACCGG
|
|
| Amino Acid Sequence |
>type VI secretion protein ImpA
MEVPLLLAAVSATSPCGEDLEYDADFLRLERDSQGQPERSMGDSILPAEPPEWRSIQQQSLDLLQRSKDLRITHFLLQSSLALEGVPGLARVLTLISELL KQYWADLHPRLDAEDDNDPTVRINALAGLASDATIRLLRESILARSRTFGAVSLRAAANASGLQSFPDENLGAEQLAGAFLDSDPEQLDIIRKALHEARS AAETIEQHVSEQVGSAQGVDLGPLKQPLKMALQILGQFAPQSGDSPQPDAISDDSAAPVEYPTAPSAPRNANANASSGEINNRDDVLRSLDRILAYYTRH EPSSPLPVLLNRAKNLVHADFAAIVRNLIPDGISQFENLRGPDSE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|