Pseudomonas sp. 35MFCvi1.1, F571_RS0113380
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 35MFCvi1.1 F571DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGTCGCCACCGCGCTTCTGCTGACCGCGTGTGCCAAGGAGGCCACCAAACCCCAGCCCGAAGAGGCTGAGGCCGACACGGCCGCCGTCGAGTTGCACTTT CACGCCATCGCCGGGCTCAACCCCGGAGCCACTGGCCAGCCGGCCCCGGTCCGGGTGCGCATTTTCGAATTGAAGAATGCCGCCACCTTCGGTCGTTCCG ATTATTTCGCACTGGCCGAACGAGCCCAGGCGACGCTCGGTGCGGATCTGATCGACCAGGACGAAGTGCTGATCCAGCCTGGCCAGCAGTTGAGTCTGCA GCGTGACCTCGATCCGGCCACCCGCCATATCGGCGTGCTGGTGGGGTATCGCGAGCTGGATCAGTCGCTGTGGCGCACGGTGATGAACGTCCCGCCGCGC CAATACACCGAATACCAGATCAGCCTCGACGTGCGAGCCGTGCGCAGCGCCGTCGCGGTTCCCCCATCCAGCCCTGCCCAATAAACAATCGGAGCCCCCC
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| DNA Sequence for Gene |
>F571_RS0113380
ATGTCCTGGAACAATCGCGTGGTCTGGTCGGAAGGCATGTTCATTGGAACGCAGCACTTCCAGCAGCATGACCGTTACCTGGAGAATCTCATCGACGCCC GGAGTCGCCCATTGTCGGCCGGTGCCTGGGGGTTTTCTGAGTTGCTGATCGACCAGGGCCTGCTGGCCCAGGGCAAACTGGCGATCATCTCGGCGCGGGG CCTGTTGCCAGACGGCACGCCATTCAACATTCCCCAGGATGACCTGGCGCCGAGCCCGCTGAATATCGATGACAACCTGCGCGATGGTTTGGTGTACCTG GCCTTGCCGCTCAAGCGCGCCGGCGCGCGTGACACCGTTGACGAAGGCGAGGCCCTGGGCGCTGCGCGCTATGTGAGTCAGGTGCGCGAAGTGCGGGACG ACAACGCGCCGTTCGAAAACCAGGCCCCGGTGGCCGTGGGGTCGAGGGCACTGCGATTATTGGTCGCCCGGGATGGCATCAGCGACTACGCGGCCATCGG CCTGGTGCGAATCAAGGAGAAACGCGCCGACCGCGCCTTGGTGCTCGATGACACTTACATCCCGCCGCTGCTGGATGTGGTCGCCTCCACGCCCTTGGCT GCGTTTCGCAACGAGCTACTGGGCCTGCTTCATCAACGCGGAGAAGCGCTCGCTGGGCGGGTGGTGGCGTCCGGTGCCGGCGGTGCTTCGGAGATTGCCG ACTTCATGCTGCTGCAACTGGTCAACCGTGCTCAGCCGTTGATCCAGCACTTGAGCCACTTGAGCCCTTTGCATCCCGAGCGCTTCTACAGCGAGTTGGT GAGCTTGGCCGGGGAATTCTCGACTTTTACCGCTTCCGGGCGGCGACCGCAGGAATTCCCGCAGTACCAGCATGATGACCTCGCGCTGAGCTTTGCGCCG GTGATGCAAGCCCTGCGTGAAGCGCTGTCGATGCTGATCGACAGCAAGGCCACGCCGATTCCGATCGTCGAAAAAGCCTATGGCATTCATGTGGCCATGC TGGCTGACAAGACCCTGCTCGACAACGCCAGTTTTATTCTGGTGGTGCGCGCCGATGTACCTGCCGAGACCCTGCGCAGCCGCTTCGGCCTGCAGAGCAA AATCGGCTCGGTGGAACACATTCGCGACATGGTCAACCTGCAATTGCCGGGCATCGGCCTGCTGCCGCTGCCGGTGGCGCCACGGCAGATTCCCTATCAC GCCGGCTCCACCTATTACGAACTCGACCGGGGCAGCGAGCATTGGCAACAACTGGCCAACTCCGGCGGTTTTGCGTTCCACATCGCGGGTCAGTTCCCGG GGTTGAACCTGGCTTTCTGGGCGATCCGAGGATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCGCGATGAATAACGACGATCGTACCCAGTTCATGCCGACACCCGGTGGCCGTGGCGCCGAGCCGGCCCGCCCGGACCCTGGCCGCGCCCAGCCCGCGC CACTGTCGATGCCGGCCGCGCCGCTGTTGACCGGCAAAGCCGAAGGTCTCAACCCCCTGGAGAGCGCCGCGGGCCCGCTGCTGGCTTTGCTGACCCGCTT GCGCAACACCATTGCCCACCCGGCACCGGCGAGTCTGCGGGCGCAACTACTGGCCTACCTGCGCCAGTTCGAGGAGCGCGCCGAGGCCGCCGGCGTGGTG CGCAACGATGTGTTGCTGGCCCGTTACGCCTTGTGCACCGCCCTGGATGAAGCGGTGTTGAGTACGCCGTGGGGCGGCACCGGCGACTGGGGCAAGCAGA GCCTGCTGATCACCGTGCACAACGAGGCCTGGGGCGGCGAGAAGGTGTTCCAGCTATTGGAACATTGCCTGCAAAGCCCCCGCGAACGTTTGTATCTGTT
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| Amino Acid Sequence |
>type VI secretion protein
MSWNNRVVWSEGMFIGTQHFQQHDRYLENLIDARSRPLSAGAWGFSELLIDQGLLAQGKLAIISARGLLPDGTPFNIPQDDLAPSPLNIDDNLRDGLVYL ALPLKRAGARDTVDEGEALGAARYVSQVREVRDDNAPFENQAPVAVGSRALRLLVARDGISDYAAIGLVRIKEKRADRALVLDDTYIPPLLDVVASTPLA AFRNELLGLLHQRGEALAGRVVASGAGGASEIADFMLLQLVNRAQPLIQHLSHLSPLHPERFYSELVSLAGEFSTFTASGRRPQEFPQYQHDDLALSFAP VMQALREALSMLIDSKATPIPIVEKAYGIHVAMLADKTLLDNASFILVVRADVPAETLRSRFGLQSKIGSVEHIRDMVNLQLPGIGLLPLPVAPRQIPYH AGSTYYELDRGSEHWQQLANSGGFAFHIAGQFPGLNLAFWAIRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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