Pseudomonas sp. 35MFCvi1.1, F571_RS0113240
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 35MFCvi1.1 F571DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAACGCCCGCGTCTGGACAGCCGTTACCAGCACAGCGACCAGGGCGCGAGCTTCCGCAAACTGATGGAAGCGATTCGTCAGGTGCTGTCGATGGTGCTCG AACAGCACGCCATCGAACTGGTTCTGCAAGCGCGTCAGTACGGGATCATCGTGTCGCCGTTGCACGACCACAAACTGCTGGGCTCGGCTTCGTTCGTGCT CGCGGCCAGTGCCAACTGCGACTCCGAAGAACTGCGCCATCGCCTGCCGGCGCACCTCAAGGTCGGCCCGGTGGAGCGCATCCGCCAACTGGTCAACCTG CACCTGCCGGGCATCAAGGTCAAACCGTTGCCGGTGGCCCCACGGCAGATCGCGTTCCACTCCAACAAAACCTATTTCATCCTCGAACTCAGTTCCGAAG ACCTGGCGCAACTCGAACGCTCCGGCGGCTTCGCGTTCCACGTGTCCGGCGAATTCGCCGAGCTTGAACTGAAATTCTGGGCCATCAGGAACTGACCGAC
|
|
| DNA Sequence for Gene |
>F571_RS0113240
ATGATCAAGGACATGGAACACACCCAGGACGACAAAACCGTCCTGCTCGACCGCCAGGGCCACGGCCCGGCCTCGAGTCCGCTGACTGACTTCGCGGCAC CGCCGCGTTTTGAACAGTTGGAAGAACGGATGATCTACGCCGCGCGCCTGCGCCCGGCCGAAGCGTTCAACATCAGCCTCAATTCGCTGGTGGCGGCGGC GTCCGAGCTGCTGTCGGAAGTGGTGCGTCTCAAACACAGCGACACCCGCGAAGACCTGTACGCGCTCAACGAGCGGCTGACCGCCGGGCTGAAACTGTTT GAAGTGCGGGCGCTGCACAACGGTGCTGAAAGCAGCCAGGTGATGGCCGCCCGTTATGTGCTCTGCACCGTGGTCGACGAAGCTGTCGTGACCACGCCGT GGGGCAACGAAAGCGAGTGGTCGCAGATGAGCCTGCTCAGCAGCTTCCACAACGAAACCTTCGGTGGCGAGAAGTTCTTCCAACTGCTGGATCGCCTGTC GAAAAACCCGGTCAAGCACCTGCCGATGCTGGAGCTGATGTACCTGTGCCTGTCCCTCGGCTTCGAAGGCAAGTACCGCGTGCAGGCCCGCGGCATGCTC GAGCTCGAAGGCATCCGCGACGCTCTGTATCGGCAGATTCGCCAACTGCGCGGCGACGTGCCTCGCGAATTGTCGCCGCATTGGGAAGGCTTGAACGATC AGCGTCGCAGCCTGGTGCGCATCGTGCCGGCGTGGATGGTGGTGCTGTTCACCGTGGTGTGCCTGGTGGTGATGTATTCGGGCTTTGCCTGGGTGCTGGG CGAACAACGCGAAACCGTTCTGCAACCTTATCAGCAGCTTGATCCGGCCACGGCTCAGCCGCAGTCGAAGCCGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACAGGGACGTGTGATGAAAAAGTTTTTCAAGAAAGTCGGCGCATTCCTGCGCCAGACCTGGGTCTGGACCCTGTTGCTGGTGCTGTTCGTTGCGCTGCTG GTGTGGTTCGTCGGGCCGCTGCTGGCGGTCAATGACTACAAATTCTGGGAAGGTTCGACCTCCCGTTTGCTGACCATCAGTGTGCTGTTCCTGATCTGGG GCCTGACCATGGTCTTCGTCAGCTGGCGCGCCGGTGTGCGCAAAAAAGCTGTGGAAGCCACCGAAGACGGCCAGGACCGTATCCGCCGTGAAGAGCTGAT CGACGAAGAAGAGAAAGAGTTGAAGGTGCGTTTCAAGGACGCCCTGAAAACCCTGAAAACCTCGAGCCTGTATCGCGGCCGCAGCGAACGCTGGCGCAGT GATTTGCCGTGGTACTTGCTGATCGGCCCGCAGGGCAGCGGCAAGACCAGCCTGCTGGACTTCTCGGGCCTTGAGTTTCCGATCAACAAGATCGACCGCA
|
|
| Amino Acid Sequence |
>OmpA family protein
MIKDMEHTQDDKTVLLDRQGHGPASSPLTDFAAPPRFEQLEERMIYAARLRPAEAFNISLNSLVAAASELLSEVVRLKHSDTREDLYALNERLTAGLKLF EVRALHNGAESSQVMAARYVLCTVVDEAVVTTPWGNESEWSQMSLLSSFHNETFGGEKFFQLLDRLSKNPVKHLPMLELMYLCLSLGFEGKYRVQARGML ELEGIRDALYRQIRQLRGDVPRELSPHWEGLNDQRRSLVRIVPAWMVVLFTVVCLVVMYSGFAWVLGEQRETVLQPYQQLDPATAQPQSKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|