Pseudomonas sp. 35MFCvi1.1, F571_RS0113060
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 35MFCvi1.1 F571DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATTGCTCGGCTAATCAGCTCTTCCCAAAACCGCTGCAAGGGCTTTACATTGGTGCTTATAGCGCGTTGAAGAGCCTGGTCAAAAAATCAGCGCTTCCCTA ATCGCTGGTGATTTTTTAAACTGTTGAGTCCGCTCGCCCAACCGGGCAGCGCGCATATTGCATTCGCTCCGAGGAATACCATGGCCCGCGTAACCGTTGA AGACTGCCTAGAACACGTGGAAAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCCACTGGTGGCAAAGAGCCCCTGGTTCAG TGGGAAAACGACAAGCCTACAGTTGTAGCGCTGCGTGAAATCGCTGAAGGCCTGATGAGCTACGAGTTCATCGCCAACGCTGAAATCGTCGAAGACGAAC CGCTGTTCGCAGCGTTCGAGGACGAGTCCAACGAGGCAGTATAAGCCATGCCTGGTCGACGTAGCACGGCGCGGGGTCATAGCAAACGGCAGGAATTATC
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| DNA Sequence for Gene |
>F571_RS0113060
ATGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGACCTACCTCGGCAAGGACCAGGTCAACCTGGTCCGCCGAGCGTACTTCTACGCCGAACAAGCCC ACGACGGTCAACGCCGCCGCAGCGGTGAGGCGTACGTCACGCATCCTCTTGCGGTGGCGAATATTCTTGCCGACATGCACATGGACCATCAAAGCTTGAT GGCTGCAATGCTGCATGACGTGATCGAAGACACCGGTATTGCCAAGGAAGCGCTGCAAGCGCAGTTCGGCGAAACCGTGGCCGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAACTTCGAGACCAAAGCTGAAGCCCAGGCCGAAAACTTCCAGAAAATGGCCATGGCCATGGCACGCGATATTCGCGTGATCC TGGTCAAGCTGGCCGACCGCCTGCACAACATGCGTACCCTGGAAGTGCTGTCCGGCGAAAAACGCCGGCGGATCGCCAAGGAAACCCTGGAAATCTATGC GCCCATCGCCAACCGGCTGGGCATGCACGCCATCCGCATAGAATTCGAAGACCTCGGCTTCAAGGCCATGCACCCGATGCGTTCCGCGCGGATCAACCAG GCGGTCAAACGCGCCCGGGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAGTCCCTCAGCCACTGCCTGGCCATCGACGGCATCCAGGGTGAGGTCA GCGGTCGTCAGAAACACCTCTATGGCATCTACAAGAAAATGCGCGGCAAGCGTCGGGCCTTCAACGAGATCATGGACGTCTACGCGTTCCGGATCATCGT CGACAAGGTCGATACTTGCTACCGCGTGCTGGGTGCCGTGCATAATTTGTACAAACCGTTGCCGGGGCGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTACCAGTCGCTGCATACCACGCTGTTCGGCATGCACGGTGTACCGATCGAGATCCAGATCCGCACCCGTGAAATGGAAGAGATGGCCAACAATG GCATCGCCGCCCATTGGCTGTACAAATCCAGCGGCGACGAACAGCCCAAAGGCACTCATGCCCGCGCCCGCCAGTGGGTCAAAGGCGTGCTGGAGATGCA GCAACGGGCCGGCAACTCGCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAAGTCTACGTGTTCACGCCCAAGGGCCGGATCATGGAG CTTCCAAAAGGCTCCACGGCGGTCGACTTCGCTTACGCGGTACACACCGACGTGGGCAACAGCTGCATTGCCTGCCGGATCAACCGTCGTCTCGCGCCGC TGTCCGAACCGCTGCAAAGCGGCTCCACGGTCGAGATCGTCAGCGCCCCCGGCGCACGGCCGAACCCGGCATGGCTCAACTTCGTGGTCACCGGCAAGGC GCGGACCCACATCCGTCATGCGCTTAAGCTGCAACGCCGCTCCGAATCCATCAGCCTCGGCGAACGCCTGCTGAACAAGGTGCTCAACGGTTTCGACAGC TCGCTGGAAAAAGTCCCGGCCGAGCGTGTGCAGTTGATGCTCCACGAATATCGCCTGGAACTGATCGAAGACCTGCTCGAAGACATCGGCCTGGGCAATC GCATGGCTTACGTGGTCGCCCGCCGCCTACTCGGCGAAGGCGAACAGCTGCCAAGCCCGGAAGGTCCGCTGGCCATTCGCGGCACCGAAGGCCTGGTGCT CAGTTACGCCAAGTGCTGCACGCCGATCCCTGGCGACCCGATCGTTGGCCATCTGTCCGCCGGCAAAGGGATGGTGGTGCACCTGGACAACTGCCGCAAC ATCAGCGAAATCCGCCACAACCCGGAAAAATGCATCCAGCTCTCGTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAGCTGCGCGTCGAACTGGAAC ACCAGCGCGGCCTGATCGCCCTGCTTGCCAGCAGCGTCAACGCGGCCGACGGCAATATCGAAAAAATCAGCATGGACGAACGCGACGGTCGTATCAGCGT GGTCCAACTGGTGGTCAGCGTGCACGACCGCGTGCACCTGGCCCGCGTGATCAAGAAACTGCGCGCCCTGACCGGGGTCATCCGCATCACCCGCATGCGC GCGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCACCCTTCACAAGGAGTCATACATGACCAAGACCGTTATCAACAGCGACAAGGCCCCGGCCGCCATCGGTACTTACTCCCAGGCGATCAAGGCTGGCA ACACCGTGTACATGTCGGGTCAGATTCCTCTGGACCCAAAAACCATGGAACTGGTCGAAGGCTTCGAAGCCCAGACCATCCAGGTCTTCGAGAACCTCAA AGCCGTGGCAGAAGCCGCCGGTGGTTCGTTTAAAGACATCGTCAAACTGAACATTTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAACGAGATCATG GGCAAGTACTTCGACCAGCCTTACCCAGCCCGCGCCGCCATCGGCGTTGCAGCCCTGCCAAAGGGTTCGCAGGTTGAAATGGATGCCATTCTGGTCATCG AGTAATGTGTCTGGCGCAGCCTTGCGAGGCTGCGCCGACTGATCTTGTACAAAGGGTTCTGAAAGGATTCCACCATGCGCCACGCGCTAGCTCTCTCGCT
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| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPSIDALADRLSTYLGKDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALQAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARINQ AVKRARGNRKEIVNKIEESLSHCLAIDGIQGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS SLEKVPAERVQLMLHEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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