Pseudomonas sp. 35MFCvi1.1, F571_RS0105500
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 35MFCvi1.1 F571DRAFT_scaffold00002.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGTGGCACCGTTCTGGCTGGAGGACTTGAGCGACGCCGGCATTCCCCATGAGTGGAGTACCGACATTCTCACCAGGCTGTGGCGCAAGCTGGCGCTCAA TTGTGCGATCAACCCGTTGACCGTATTGCACGAATGCCGCAACGGCGGTTTGCAGCAACATCAGTGCGAAGTGGCCACCCTGTGCGCCGAACTCACCGAA CTGCTGGAGCGCTGCGGCCAGCCGGCGGCAGCCGAAAACCTCCGGGAGGAAGTCGAACGGGTGATCAAGGCTACCGCGACCAATTTCTCCTCGATGTACC AGGATGTCGCCAATCAGCGCCGCACCGAAATCAGCTACCTGTTGGGCCATGCCTGCAAAGTTGCGTCGCGGCATCAGTTGAACCTGCCCCACCTCAATCA ATTGCAGCAGCGCTTGATCGATCATCTGCACAGCCTTGGATTGCCCAGCGACTGAGCAGCGGCTACGCTGGCCACTTGTTCCTTTTCAGCGATGAACCTG
|
|
| DNA Sequence for Gene |
>F571_RS0105500
ATGCCATTGCGCCAGCGCCTTGAAAACCTTCCGGTCGGCCAGAAACTGCTGGCCGCCCTGCTGGTGCTGTTGACCACCGTTTTGCTGGTCGCCAACCTGA CCTTTATCAGTGCCGCGTATTACATCTCCCAGGAAAGCATGGCCCCCCAGGCCCTGCAGACCATCGGCCGACTGGTGTCCAACCCGAGCCTGGTGTCCGA CGCGCTGAAGTCGCCGCAAAACGCCGAACGCCTGCTCAACGAACTCAACAGTTATTCACCACTGCGTGCGGCAGCCCTTTACGACGGCACGGGTACGCGT CTGGCGCAGCTGCAACACGGCGACACGCTGAACCTGCCAGAGCACTACCAGCACCTCGAAGCCTGGCAAGCCACGGAGTTTCGCAGCAATCAAGTGATCA CCCTGCCCCGCCCCGGCACCGCTCCCGGGCATTTGCTGCTGGTGGCCAGCAGCGAATTGCCGATGGCGTTCTACACCGGGACTCTGACCGCCAGCCTGGG GATTCTGATCTTCAGCGTGCTGTTGTGGCTGGTGATCGCCCGGCAGATCAAACGCCTGATTACCCGCCCCATCCATCAGCTCGAAGAGCTGTCCCGGCAA GTCACCCGGGAAGAGAACTACGCCCTGCGCGCCTCTCGCGGCAACCACGACGAAATCGGCAGCCTCGCCGAAGCGTTCAACACCATGCTCTCGCGCATCG AGGCCCGGGAGCAGCAGCTCAAGCGTGCCCGTGACGATTCCCAGGCGGCTTACGATCAGGCCCAGGGGCTGGCCGAAGAAACCCGTCACACCAACCGCAA GCTGGAACTGGAAGTTCAGGTGCGGAGCAAGATCGAGAAAAAACTTACCGGTTTCCAGAACTACCTCAACAGCATCATCGACTCCATGCCATCGGCACTG ATCGCACTCGACGAGCAGCTTTACGTGACCCAGTGGAATCAGGAGGCCAGCGCACTGTCCGGCACGCGCCTGGACGAAGCCTTGAACCAGCCTATCTTTC TCGCCTTCAAACCCCTCAAGCCATTCCTGCCGCAGCTCAAGCAAACCGTCGAGCAGCATACGGTGGCCAAGATCGAACGCGTTACCTGGCTCAAGGACGA CGAACCCCGGCATTACGCCCTGACGTTCTACCCGTTGATGGGCGGTGCCGGACGTGGCGTGGTCATCCGGATCGACGACATCACCCAGCGTCTGTCCCTG GAAGAAATGATGGTGCAGTCGGAAAAAATGCTCTCGGTCGGCGGCCTCGCCGCCGGTATGGCCCATGAGATCAACAACCCGCTGGGCGCGATCCTGCACA ACGTGCAGAACATTCGTCGACGTCTGTCCCCCGACCTGCCGAAGAACCTCGAACAGGCCGAGCAAATGGGCATCGAACTGGAAACGGTCAATAAGTACCT GAAAGCGCGTGAAGTACCGCAGCTGCTCGACGGCATTCAGCAGGCTGGCGCCCGGGCGGCGAAGATCGTGACCCACATGCTCAGCTTCAGCCGCCGCAGC ACTCGGCAAATGGCACCATGCGACCTGCCGGCACTGATCGATCAAGCGGTGGAAATCGCCGGCAACGACTTCGACCTGGCCATTGGCTTCGACTTCAAGG GCCAGGCGATCATTCGCCAGTTCGATCCGGCGCTGGGCCCGGTACCCGGCACCGCCAACGAACTGGAACAGGTGCTGCTCAACCTGCTGAAAAACGCTGC GCAAGCCATTCACCAGCGTACAGACGACCGCGAACCAGGGCGGATCATTCTGCGCACAAAACTGAATCCGCCGTGGGCGGAAATCCAGGTCGAGGACAAC GGCATTGGCATGAGCGAAAGCGTGCGCAAACGCACGTTCGAGCCGTTCTTCACCACCAAGGAAATCGGTCAGGGCACCGGCCTTGGGCTCTCGGTTTCGT ATTTCATCATCACCAACAACCACAAGGGCCAGATGGAAGTGCAATCGACGCCGGGCCAAGGCACTTGCTTCACCTTGCGCTTGCCTTTGTCGGGCACTGC GGTGAACTCTCAAGAACTCAATCAGCTGTCGAGGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCATGGGCTTTCGTTTGTCGAAGATTTACACCCGCACCGGTGACAAAGGCGAAACCGGGCTTGGTGACGGCCGCCGGGTGCCCAAGGACCATCCGCGAAT CGAGGCCATTGGCGAGGTCGATACGCTGAACAGCCAGGTGGGCGTGCTGTTGGCCGGGTTGGCCGCGCAAAGTGGCGAGTTTCCCGGACTTGGCGAAGTG ATCGAGGTATTGGCGCCCTGCCAGCATCGGTTGTTCGACCTCGGTGGCGAACTGGCCATGCCGGTGTATCAGGCACTGAACACGGCAGAAATCGAACGGC TGGAAGCGGCCATTGATGTGTGGAATGAAGAACTGGGGCCGCTGGAGAATTTCATTCTGCCCGGCGGTTCGGCGCTGATTGCCCAGGCCCACGTGTGCCG CAGCCTGGCGCGCAGTGCCGAGCGCCGGTGTCAGCAATTGAATACGATCGAACCGTTGGCCGGGGTGGGCCTGGCGTATATCAATCGGTTGTCGGATTTG
|
|
| Amino Acid Sequence |
>histidine kinase
MPLRQRLENLPVGQKLLAALLVLLTTVLLVANLTFISAAYYISQESMAPQALQTIGRLVSNPSLVSDALKSPQNAERLLNELNSYSPLRAAALYDGTGTR LAQLQHGDTLNLPEHYQHLEAWQATEFRSNQVITLPRPGTAPGHLLLVASSELPMAFYTGTLTASLGILIFSVLLWLVIARQIKRLITRPIHQLEELSRQ VTREENYALRASRGNHDEIGSLAEAFNTMLSRIEAREQQLKRARDDSQAAYDQAQGLAEETRHTNRKLELEVQVRSKIEKKLTGFQNYLNSIIDSMPSAL IALDEQLYVTQWNQEASALSGTRLDEALNQPIFLAFKPLKPFLPQLKQTVEQHTVAKIERVTWLKDDEPRHYALTFYPLMGGAGRGVVIRIDDITQRLSL EEMMVQSEKMLSVGGLAAGMAHEINNPLGAILHNVQNIRRRLSPDLPKNLEQAEQMGIELETVNKYLKAREVPQLLDGIQQAGARAAKIVTHMLSFSRRS TRQMAPCDLPALIDQAVEIAGNDFDLAIGFDFKGQAIIRQFDPALGPVPGTANELEQVLLNLLKNAAQAIHQRTDDREPGRIILRTKLNPPWAEIQVEDN GIGMSESVRKRTFEPFFTTKEIGQGTGLGLSVSYFIITNNHKGQMEVQSTPGQGTCFTLRLPLSGTAVNSQELNQLSR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|