Pseudomonas sp. 35MFCvi1.1, F571_RS0100270 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 35MFCvi1.1 F571DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGAAGGCGCCGGCAGTGATCAGGCCTTGTTTTTCGCCGGTAACGGACATGTACGCTGGTGTAGCCATGGATGTGCTCCTTGCTAAAAGTTAGGGTGCCCG GGAGGCGGTATCGCCCGGTGGGTGCCTGACTGTTATCAAGGAGCGTGCCATAAATGTTTTTTGTCATATAAATCAGGTAGTTGAGGGTATTTTTTAAACG TGGAGAGGTTGTTCGGCAGCGATCACCTGAAAAAGTGCGCAACTTCTTGCGCAGTGGTGCGCAAGAAGTTGCGCACTCGGCTGGAGGGCTTGATCCACCT GGCGTTCAGCGATGTTGAGGTGTATTTGGGACGAATAACTGCGCAAGAAGTTGCGCATCAAGGCTATGAGCGATCATCCCGATAGACCCAGCCGTCTGTC CGGGCAATTCCAGTGGCGATGGAATTTTTTTCCGGACCTGTCGCTCTGCTGATGTAGAGACGTGCCGATTCAACGTCCGCCAGCGAGCACCCGGTAAGCC
|
|
| DNA Sequence for Gene |
>F571_RS0100270
|ligD
ATGAACAAGACCCTGGACGATTACAACCGCATGCGTGACTTTGTGGCGACTCCGGAACCGGCCGCCGCCAAGCGTTCGGGCAAAAAAGCGGTGAAGGATC ACGCGCTGCAATTCTGCATTCAGAAACATGACGCCTCGCAGCTGCACTATGACTTTCGCCTGGAGCTCGATGGCGCGCTGAAAAGTTGGGCCGTGCCGAA AGGCCCGTCGCTGGACCCCAAGGTCAAGCGACTGGCAATCCACGTCGAAGACCATCCGCTCGATTACGCCACGTTTGAGGGCACCATTCCCGAAGGGCAT TACGGCGCCGGCGAGGTGATCGTTTGGGACCGTGGGGTGTGGATTCCCCAGGACGACCCGGCCAAGGCGTACGCCAAGGGCCGGCTGAAATTCGAGTTGC AAGGGGAGAAGCTCGGCGGCCTGTGGAACCTCGTGCGCACGCACATGCCGGGCAAGCAGGAGCAATGGTTTCTGATCAAGCATCAGGACGGCGCGGCCAG GCCCGAAAGCGATTACGACGTGGTCGCCGCCGAGCCCGACAGCGTACTCAGCGATCGCACCATTGTCGCCAAGTCGAAACCCAGTCCCGTAAAAAAGCCA GCGGCGAGGGCGCGCAGAGAGCGTTCATCACAGCTGAAAGGCGCTCGTAAAGCCAGACTGCCGGAGCTGCTCAAACCCGAATTGGCGACACTGGTGGGGT CCGCGCCGGACGGCGAATGGAGCTATGAGATCAAGTTCGACGGCTACCGGGTCATGGCGCGCATCGACCACGATGAGGTCAAACTCTTCACCCGCAACGG TCACGACTGGACTCACAAATTGCCGGAGCAGGCTGCAGCGCTAGCGGCGTTGGGCTTGGAATCGGCCTGGCTCGACGGCGAAATGGTGGTGGCGGACGAG CAGGGTGTTCCGGATTTTCAGGCGCTGCAAAACGCCTTCGATGCCGGTCGTAGCGCCAGCATCGTTTACTACCTGTTCGATTTGCCTTACCTCAACGGCG TGGACCTGCGCGAAGTTCCTGTCGAAGCGCGCAGGGCGACGCTGGCGACCGTGCTCAAGCCCACTGAAAACCCTCTGTTGCGGTTCTCCGACACGTTCAA CGAGTCCCCGGAGGCGTTACTTGACAGCGTCTGCAAAATGCACATGGAAGGGTTGATTGGCAAACGCCTGGGCTCGCCTTACGTGTCCCGGCGCAGCAGT GACTGGATCAAACTAAAGTGCAAGCATCGGCAGGAATTCATCGTGGTCGGCTTCACCGATCCCAAAGGCTCGCGCAGTGCCTTTGGCGCGTTGCTGCTGG GGCTGCACGACCGTGACAGCGGGGAGTTGCGCTATGCGGGCAAGGTCGGCACCGGATTCAGCGAGGCGAGCCTCAAGCGTCTTTACGAACAACTGAAACC GCTGCAGGCGAAAAAGCCCTCGGTGGTCAACCCGCCCACCGGTGTTGAAGCCAAGGGTGTGCATTGGCTCAAACCCGTTTTGCTGGCGGAAGTGGCCTTC GCCGAGATGACCAAGGACGGCTCGGTGCGCCAGGCCGTATTCCATGGGTTGCGCGAGGACAAACCTGCCACCGACATCACCGAGGAGCGTCCGACAACCG TGAAAACCTCAACCACTAAAACTAAAACCTCCCAAGCAGCACCGTCACAAGTCGGCCTGGAGCAGGGCAAGGTGCGCATCACGCATCCGGATCGGGTGAT CGATGCCAGCAGCGGCACCACCAAGATGCAATTGGCGGAGTATTACGCCAGTGTCACCGAGTGGATTCTGCCGCAACTCAAGGACCGGCCGGTGGCGCTG GTGCGCGCACCGGACGGTATCACCGGCGAACTGTTCTTTCAGAAGAACGCCGAGAATCTGGCCATACCCGGCATTATCACTCTGGACAAGGCACTGACCG GCCAACCGATGATGGTTATCAACAATGCCGAAGCCCTGATTGGCGCAGTGCAGATGAGCACCGTGGAGCTGCACACCTGGAACGCCACGTCGGTCGATCT GGACAAACCCGACCGCTTCGTCCTCGACCTCGACCCGGATCCGGCGTTGCCCTGGAGGAGCATGGTCGAAGCGACCCGGCTGATCCTCACGGTGCTGGAT GAGCTGGGGCTCAAGGCGTTTCTCAAGACCAGCGGCGGCAAGGGGATTCACCTGGTCGTACCGCTGACCCGCAAACACGGTTGGGACGAGGTCAAGGACT TCAGCCACGCGATTGTCAGTCACATGGCCAAGCTGCTGCCGGAACGATTTTCCGCAGTGTCGGGGCCGAAAAACCGGGTTGGGCGCATCTTCATCGATTA CCTGCGCAACGGCCTCGGCGCCACCACGATCTGCGCTTATGCCGTGCGCAGCCGCGAAGGGTTGCCAGTGTCGGTACCGATCTTTCGCGAAGAAGTGGCT GAGCTCAAGGGCGCCAATCAATGGAACCTGCACACCGTGCATGAGCGCCTGGCCGAGGTGGGCGATGAACCCTGGGCCGAGCTGAAGAAAACCCGGCAGA CGATTACCGCCGAGATGCGGCGACGGATCGGGATGAAAAAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGAAGTAGAGGAGGGTGAGGCTTGCCCCTTGTTGGAGCGAGCAGACTCGCTCCAACAAGGGGTCAAGCTCTTACATAACTATTGCTTGCCCACTGCGGCA GCGAGCAGCGGCGCCACCTGTTCATCGGTCAATGCGGCGTGGACTTCCATGTTCATGAGGTCGCTCCATTCCAGCACCCACTTCTGAATCGCCACTGGAT CACTGGCCTCGGCAATGCCCACGCCGCTGGAGCCGCCGACGGCATGCCAGCGCCCCAGCATTTTGACGCCTGCGGGTGGGGCGCCACCGGTCTTGAGAAA ACGTTCGATCGCGCTGTTACGTTGCTGCGGACTGATGGACCAACGGACCATGAATAACATCTGCCACCTCCTGCTACGGACTGGCACCTTTGATCTTCGC GTTCCTGGCTGGCGCCGGGGCCACGGTCACGCCTGAGTTTCCAGCGACGTCCTGGCTGGCCTGAAACCTGTTCTCCCATGAGAAGGCATAGCAGCGGACC
|
|
| Amino Acid Sequence |
>ATP-dependent DNA ligase
MNKTLDDYNRMRDFVATPEPAAAKRSGKKAVKDHALQFCIQKHDASQLHYDFRLELDGALKSWAVPKGPSLDPKVKRLAIHVEDHPLDYATFEGTIPEGH YGAGEVIVWDRGVWIPQDDPAKAYAKGRLKFELQGEKLGGLWNLVRTHMPGKQEQWFLIKHQDGAARPESDYDVVAAEPDSVLSDRTIVAKSKPSPVKKP AARARRERSSQLKGARKARLPELLKPELATLVGSAPDGEWSYEIKFDGYRVMARIDHDEVKLFTRNGHDWTHKLPEQAAALAALGLESAWLDGEMVVADE QGVPDFQALQNAFDAGRSASIVYYLFDLPYLNGVDLREVPVEARRATLATVLKPTENPLLRFSDTFNESPEALLDSVCKMHMEGLIGKRLGSPYVSRRSS DWIKLKCKHRQEFIVVGFTDPKGSRSAFGALLLGLHDRDSGELRYAGKVGTGFSEASLKRLYEQLKPLQAKKPSVVNPPTGVEAKGVHWLKPVLLAEVAF AEMTKDGSVRQAVFHGLREDKPATDITEERPTTVKTSTTKTKTSQAAPSQVGLEQGKVRITHPDRVIDASSGTTKMQLAEYYASVTEWILPQLKDRPVAL VRAPDGITGELFFQKNAENLAIPGIITLDKALTGQPMMVINNAEALIGAVQMSTVELHTWNATSVDLDKPDRFVLDLDPDPALPWRSMVEATRLILTVLD ELGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVSHMAKLLPERFSAVSGPKNRVGRIFIDYLRNGLGATTICAYAVRSREGLPVSVPIFREEVA ELKGANQWNLHTVHERLAEVGDEPWAELKKTRQTITAEMRRRIGMKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|