Pseudomonas sp. CF150, CF150_26959
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CF150 soap_scaffs_150.Contig82, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGATTGCCGGGCTTTTTTTTGGGCGACGAGTGTGGATCGGCCGAAAAAATGGAACTCATTGAGACGAACCGGCCACGTAGTCGAAGAGAGGAATACACC TCTCGTCCAACGCAGGAGAGTCAACTATGGAACCAGTTTCGATGATGGCCGCCGCCGGCGCCGCCGCCTCGGTGGCACTGCCCATTGCAGGAAAAGCGGC CGAGATGGGAATGGATCTACTCAAGGACGTGATTGACCGTGTCACGGACGGAGCCCAAGGCGGCCAACTGGGCGCGGATCCACAGTCATCTGCCCCACCA CAGATTAATTTTTAATCAAGCAACCACTTGGCCCCCCGCAAGGCAACATTCACGGCGGATTCCATCCGCCGTTTTCCTGCCCACCGTCGCTGCAAAGCGC CACCCCCCTTCCCACAGTAATGTCCCTTTGACTGCCCTCCCCAGATTGCCAATACTCATGGCATATTGACGGCCACCCGCATGAGACAAGGAATGCCCCT
|
|
| DNA Sequence for Gene |
>CF150_26959
TTGAAGCTGGAACTCAAGAACAGCTTGTCGGTGAAGTTGCTACGGGTTGTGCTGCTGTCGGCCTTGATCGTGGGTGTGGCGCTGAGCGTGGCGCAGATCG TTTTTGATGCCTACAAGACACGCCAGGCCGTGGCGGGCGATGCCCAGCGCATCCTCGACATGTTTCGCGACCCCTCGACCCAGGCCGTGTACAGCCTGGA TCGCGAGATGGGCATGCAGGTGATCGAAGGTCTGTTCCAGGACGATGCTGTGCGCATGGCCTCTATCGGCCATCCCAACGAGACCATGTTGGCGGAAAAA AGCCGCCCTTTACAGCGGTCCCCCAGCCGCTGGCTGACCGACCTGATTCTTGGCCAGGAACGATCCTTTACTACCGCGTTAGTCGGCAAGGGCCCCTACA GCGAATATTACGGCGACCTGAGCATCACCCTCGACACCGCCACCTATGGCCGAAGTTTCCTGGTCAGCTCGGTCATCATCTTTATTTCGGGCGTATTGCG CGCCCTGGTCATGGGGCTGGTGCTGTACCTGGTGTATCACTGGATGCTGACCAAACCGCTGTCGCGGATGCTCCAACACCTGACCTCGATCAACCCGGAC CGCCCCAGCGAGCACAAGATCCCTCAGCTCAAGGGTCATGAACGCAACGAACTGGGACAGTGGATAAACACCGCCAACCAATTGCTCGAATCCATTGAGC GCAATACCCACCTGCGGCACGAGGCCGAGTCCAGCCTGTTGCGCATGGCCCAGTACGACTTCCTGACCGGCCTGCCGAACCGCCAGAAGTTGCAGGCGCA ACTGGACAAGATCCTAACGGACGCTGGCCGCCGGCAACGCCGTGTCGCGGTGTTATGCGTGGGGCTGGATGACTTCAAGAGCGTCAACGAGCAATTCACC TACCAGGCCGGCGACAAACTCTTGCTGGCCCTGGCCGACCGCCTGCGCGCCCATAGTGGCCGCCTGGGCACGCTCGCCCGCCTGGGCGGCGACCAGTTCG CCTTGGTGCAAGCCGATATCGACCAGCCCTACGAGGCCGCCGAACTGGCACAAAGCATCCTCGATGACCTGGAGGCTGAATTCGCCCTCGACCACGACCT GATCCGCCTGCGCGCCACCATCGGCATCACGCTGTTTCCGGAAGATGGCGACAGCACCGAGAAGTTGCTGCAAAAAGCCGAGCAGACCATGACCCTGGCC AAGAGCCGCTCGCGCAACCGCTATCAGTTTTATATCGCCAGCGTCGACAGCGAAATGCGCCGGCGCCGTGAACTGGAGAAAGACCTGCGCGATGCCCTGA GCCGCGAGCAGTTCCACCTGGTGTACCAACCGCAAATCAGCTATCGCGACCATCAGGTGGTCGGCGTGGAGGCCCTGCTGCGCTGGCAACACCCGGAACA TGGGCTGGTACCGCCGGACTTGTTTATCCCGCTGGCGGAACAGAACGGCACCATCATTCCCATTGGCGAATGGGTGCTGGACCAAGCGTGCCGGCAATTG CGCGAATGGCATGACCAGGGTTTCACGGCGCTGCGCATGGCCGTCAACCTGTCCACGGTGCAACTGCACCACACCGAATTGCCGAGGGTGGTCAACAACC TGATGCAGATCTATCGCCTGCCGCCACGCAGCCTGGAGCTGGAAGTCACCGAGACCGGCCTGATGGAAGACATTAGCACCGCCGCCCAGCATCTGCTGAG CCTGCGTCGCTCCGGGGCGCTGATCGCCATTGATGACTTCGGCACCGGCTATTCCTCCCTGAGTTACCTCAAAAGCCTGCCACTGGACAAGATCAAGATC GACAAGAGCTTCGTCCAGGACCTGCAGGACGACGACGATGACGCAACCATCGTGCGCGCCATTATCCAATTGGGTAAAAGCCTGGGCATGCAGGTGATTG CCGAAGGGGTGGAGACCGCCGAACAGGAGGCCTACATCATCTCCGAGGGGTGCCATGAAGGGCAGGGTTATCACTACAGCAAACCGCTGCAGGCCCGGGA GTTGACGGCTTATCTGAAGCAGTCCGAACGTAATAACGCCGTGAGTCTTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ATTTACACTTCGATACTCAATATTTCCCGCGTATAAGCCTTTACACAAAATGCAAATCTTTCGCATTATGTCGCAGCGTTTGCGCTCCCCGCGCGCCCTT TCAACAACCGAAGCAGGATGTTCGCCATGATTCGTATGCCCCTGGCCACCGCCAGTCTGCTGGCCATTGCCATTTCTCTCGCCGGTTGCGGCGAAGGTAA AGACAAGGCCGCCGCGCCCCAGGCACCCGCTGCCGCCAGCACTACCGCACCGGCGGCTGCCCCGGCAGGCCAGGTCGACGAAGCAGCCGCCAAGGCCGTG GTCGCGCACTACGCAGACATGGTGTTTGCGGTGTACAGCGATGCCGAATCCACCGCAAAAACCCTGCAGACCGCAATCGATACTTTCCTCGCCAACCCGA ACGACGAAACCCTGAAAGCGGCCCGTACCGCCTGGATCGCCGCACGCGTACCCTACCTGCAGAGCGAAGTATTCCGCTTCGGCAACACCATCATCGACGA
|
|
| Amino Acid Sequence |
>diguanylate cyclase
MKLELKNSLSVKLLRVVLLSALIVGVALSVAQIVFDAYKTRQAVAGDAQRILDMFRDPSTQAVYSLDREMGMQVIEGLFQDDAVRMASIGHPNETMLAEK SRPLQRSPSRWLTDLILGQERSFTTALVGKGPYSEYYGDLSITLDTATYGRSFLVSSVIIFISGVLRALVMGLVLYLVYHWMLTKPLSRMLQHLTSINPD RPSEHKIPQLKGHERNELGQWINTANQLLESIERNTHLRHEAESSLLRMAQYDFLTGLPNRQKLQAQLDKILTDAGRRQRRVAVLCVGLDDFKSVNEQFT YQAGDKLLLALADRLRAHSGRLGTLARLGGDQFALVQADIDQPYEAAELAQSILDDLEAEFALDHDLIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KSRSRNRYQFYIASVDSEMRRRRELEKDLRDALSREQFHLVYQPQISYRDHQVVGVEALLRWQHPEHGLVPPDLFIPLAEQNGTIIPIGEWVLDQACRQL REWHDQGFTALRMAVNLSTVQLHHTELPRVVNNLMQIYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDLQDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIISEGCHEGQGYHYSKPLQARELTAYLKQSERNNAVSL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|