Pseudomonas sp. CF150, CF150_25129
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CF150 soap_scaffs_150.Contig78, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCCTACGGCCTGCACACGCCCGCCCTGCATACCAAAGGCGTAAAGGTGTTTGTGCTGGCCGAAGACATGCAGGCGCGCAACCTGCCGCTGCCCGACTGG GCCGACAGCGTCGATTACCCAGGCTTCGTGCAACTGTCGATCGACTACGACAAGGTCAACACCTGGCTATGAACACCCTGACCGTCGGCGCACGCACCCT GGAACTGGATAAGGACGGCTACCTCGTCGACCTCAACGACTGGTCCGATGAAGTGGCGAATGCCCTGGCCGCTGCCGAAGCCTTGGAGCTGACGCCGGCA CACTGGGAAATCCTCACCCTGCTGCGCCAGTTCTACACCGAATTCCAGCTATCCCCCGCCACGCGCCCGCTGATCAAGTACACCGCCTTGAAGCTGGGCC CGGAAAGGGGCAACAGCCTGCACCTCAACAAACTGTTCAACGGCACTCCCGCCAAACTCGCCGCCAAGCTGGCGGGCCTGCCCAGGCCGACGAATTGCTT
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| DNA Sequence for Gene |
>CF150_25129
ATGACCGACTTTGCCCCCCTGACTCTCGTAACGCCCCAAGAGCATCCCTTTGCGCAGTTCGTGCGCATCCTCGGCAAAGGCAAGCGTGGCGCGCGCAACC TCACCCGCGAGGAAGCGCGGGAAGCCATGGGCATGCTGCTCGACGAAAAGGTCGAGGACACCCAGCTCGGCGCCTTCCTGATGCTGCTGCGCCACAAGGA AGAAAGCCCGGAAGAACTCGCCGGTTTCACCGAAGCCGTACGTGAGCGCCTGCACGCGCCAGCGCTGAACGTCGATATCGACTGGCCGACCTACGCCGGT AAAAAGCGCCACCTGCCGTGGTTCCTGCTGGCAGCCAAATGCCTGGCGCAGAACGGCGTGCGCATCCTGATGCACGGCGGCGGCGCCCACACTGCGGGGC GCTTGTACACCGAGCAATTGCTGGACGGCTTGCAGATCCCGCTGTGCCGCGACTGGCAACAGGTCCAGAGCGCCTTCGCCCACGGCAACCTGGCATTTAT CCCGCTGGGTGATTGGGCCCCACAGCTGCAACGCATGATCGACCTGCGCAACACCCTGGGCCTGCGCTCGCCTATCCACTCTCTGGCGCGCCTGCTCAAC CCGCTGAATGCGCGTTGTGGCCTGCAAAGCATTTTCCACCCCGGTTACCAGGGCGTGCATCGCGATGCCAGTGGCTTGCTGGGTGACAACGTGATTGTGG TCAAGGGCGACGGCGGCGAGATCGAGATCAACCCCGACACCCTCAGTCACCTGTACGGCACCACCGGCGGCCAGAGCTGGGACGAAGAGTGGCCCGCCCT CTCAGACCAGCGCCACGTCAAGCCAGCAACGCTTGAGCCCGAGCACCTCAAAGCGCTGTGGCGCGGCGATGTTGAAGACAGCTACCCGCAACTGGCGTTG ATCGCCACCATGGCGTTGGCCCTGCGCGGCCTTGGCCACCCACGGCAACAGGCGTTCGAGTTGGCCCAGCAGTACTGGGACGCACGGGATAAATCGATTT AA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGATCATTCACGCCGGTTCTTTGCGCTTTTAGTTCGAACTCATCCCTTTAGACTGGGCTCCAACGCTTATCAGCCAAGGAGCCAGTCATGGGTTTATTG ATCGACGGACAGTGGAAAGACCAGTGGTACGAAAGTAGCGCCGATGGCGCTTTCCAACGGGAGCAGGCACAACGCCGCAACTGGGTGACCGCCGATGGCG CGCCAGGCCCGAGTGGTGAAGGCGGCTTCAAGGCCGAGGCCGGTCGCTATCACCTCTATGTATCCCTCGCCTGCCCGTGGGCGCACCGCACCTTGATTCT GCGCAAGCTCAAGGGCCTGGAAAGCCTGATCGACGTCTCGGTGGTCAGTTGGCTGATGCTGGAAAACGGCTGGACCTTCGACAAGGCCCACGGCTCCAGC GGCGACAAACTGGACGGTTTCAACTTCATGCACCAACGCTACACCGCCGATACCGCCGACTATACCGGGCGCGTGACCGTGCCGGTGCTGTGGGACAAAA
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| Amino Acid Sequence |
>hypothetical protein
MTDFAPLTLVTPQEHPFAQFVRILGKGKRGARNLTREEAREAMGMLLDEKVEDTQLGAFLMLLRHKEESPEELAGFTEAVRERLHAPALNVDIDWPTYAG KKRHLPWFLLAAKCLAQNGVRILMHGGGAHTAGRLYTEQLLDGLQIPLCRDWQQVQSAFAHGNLAFIPLGDWAPQLQRMIDLRNTLGLRSPIHSLARLLN PLNARCGLQSIFHPGYQGVHRDASGLLGDNVIVVKGDGGEIEINPDTLSHLYGTTGGQSWDEEWPALSDQRHVKPATLEPEHLKALWRGDVEDSYPQLAL IATMALALRGLGHPRQQAFELAQQYWDARDKSI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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