Pseudomonas sp. CF150, CF150_21681
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CF150 soap_scaffs_150.Contig73.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGTACGCGAAGTGGTGGCGGTGGAGGGCGTACAGGCCATGGTGGACCGTGCGGCCCTCAATGCCGTCAGCAACCATTTGCATAACGCACAGTTTTTTCA GGCCGATTTGTCCCAGCCTTTGACCGACGCAGAATGGGCCAAACAGGGCTTTTCTGCGGTACTCTTGGACCCACCCCGCGATGGTGCCCTGGAGGTTGTG CGCAAACTCGCCGCCTTGGGGGCCAAGCGCCTGGTGTATGTGTCCTGCAACCCAGCCACGCTGGCGCGGGACACGGTTGAGTTGGTCAAGCAAGGCTACC GGCTAAAGCGTGCCGGGATCCTCGACATGTTTCCGCAGACCGCGCATGTCGAGGCCATGGCGTTATTTGAAGCGGGCTAGGATGCCCGTTTAATCCGACT GGCCTGCGTTCTCCAGGGCCTGAACACTGCCACGGAGCTCGCAGTAAAGTCGGCGATGATTTTGGCGCATCGAAGGTGCGTCGTAGGGAAGGTAAGCAAG
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| DNA Sequence for Gene |
>CF150_21681
ATGGTACAGGTGAGAGCACACCAGCCGATCAACACCGACGGCAGTATCAATCTCGAGGCATGGCTGGATCATGCCGTCAGTGTCGACCCGGCACTGGACC GTGAAGCCTTGAAAGCAGCCTGCGAGTTCGCTCGTGAGTCTGAACAGCAAGACAATGCGGCCAAGAACCTGTGGGCCGAAGGCACTTCAAGTTTTCGCAC TGGCCTGGAAATCGCCGAGATCCTGGCCGATCTCAAGCTGGACCAGGATTCGCTGATCGCCGCCGTGCTCTATCGCGGCGTACGCGAAGGGCATATTCCG TTGGCCACCGTTGGCCAGCGTTTCGGTTCGGTGGTGGCCAAGCTGATCGACGGCGTGCTGCGCATGGCGGCCATTAGCGCCAGCCTCAGCCCGCGGCAGT CGATGGTGCTGGGCACCCAGGGCCAGGTAGAGAACCTGCGCAAAATGCTGGTAGCGATGGTCGACGACGTACGCGTCGCCCTGATCAAGCTGGCCGAGCG TACCTGCGCGATCCGTGCGGTGAAGACCGCCGATGACGAAAAGCGCAACCGTGTGGCCCGCGAAGTCTTCGACATCTACGCGCCGCTGGCCCATCGCCTG GGCATCGGCCATATCAAGTGGGAGCTGGAGGATTTGTCCTTCCGCTACCTGGAACCTGACCAGTACAAACAGATCGCCACGCTGCTGCATGAGCGGCGCC TGGACCGCGAGCGCTTTATCAGCGACGTGATGGGCCAGTTGCGTTCGGAGCTGCAGGCCACCGGCGTGGACGCGGACATCAGCGGCCGCGCCAAGCACAT CTATTCCATCTGGCGCAAAATGCAGCGCAAGGGCCTGGCCTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATGCGCGACTGC TACACCGCGCTGGGTATCGTCCACACCCTGTGGCGCCACATCCCCAAGGAATTTGACGACTATATCGCCAACCCCAAGGAAAACGGCTACCGCTCGCTGC ACACCGCCGTGATCGGCCCTGAAGGCAAGGTGCTGGAAGTGCAGATCCGCACCCACGCCATGCACGAAGAGGCCGAGCTGGGGGTGTGCGCGCACTGGCG CTACAAGGGCACCGACGTCAAGGCCGGGTCCAACCAGTACGAAGAGAAGATCTCCTGGCTGCGCCAAGTGCTGGAATGGCACGAAGAACTCGGCGACATC GGCGGCCTGGCCGAGCAACTGCGGGTGGATATCGAGCCGGACCGGGTCTATATCTTCACGCCTGACGGCCACGCCATCGACTTGCCCAAGGGCGCTACGC CGCTGGACTTTGCCTACCGCGTGCACACCGAAATCGGGCATAACTGCCGCGGCGCCAAGATCAACGGGCGCATCGTGCCGCTCAACTACAGCCTGCAAAC CGGTGAACAGGTCGAGATCATCACCAGCAAGCACGGTACGCCGAGCCGCGACTGGCTGAACCCGAACTTGGGTTACATCACCACTTCGCGGGCGCGGGCG AAGATCGTCCACTGGTTCAAGCTACAGGCGCGTGACCAGAACGTCGCCGCCGGCAAGACTTTGCTTGAACGCGAACTGGCGCGCCTGGGCCTGCCTCAGG TGGACTTCGACAAGCTGGCCGAAAAGGCCAACATGAAGATCGCCGAAGACATGTTTGCCGCCCTCGGCGCGGGCGACCTGCGCCTGGCGCAACTGGTCAA CCTGGCCCAGCAACTGGTCGAGCCTGAGCGCGGCAACGAACAGCTGGAGCTGATCCCGCGCAAAGCCACTGGCTACAAGCCGGGCAAGCGTGGCGATATC CAGATCCAGGGCGTGGGCAACCTGATGACGCAAATGGCCGGCTGCTGCCAGCCGTTGCCGGGCGACGCCATTGTCGGCTACATCACCCAGGGCCGTGGCG TAAGCATTCACCGCCAGGACTGCGCCTCGGTGCTGCAGCTGGGCGGGCGCGAACCGGAGCGGATCATCCAGGTCAGCTGGGGGCCGGTGCCGGTGCTCAC GTATCCGGTGGACATTATCATCCGTGCCTACGACCGTTCCGGCTTGCTGCGTGACGTCTCGCAAGTGCTGCTCAACGAGCGGATCAACGTGCTGGCGGTC AACACCCGTTCGAACAAGGAAGACAACACTGCGTTGATGTCCCTGACCATCGAGATTCCGGGGTTGGACGCACTGGGACGGTTGCTGGGGCGGATTTCCC AGTTGCCGAACATCATCGAAACCCGGCGCAACCGCACCCCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATAGCTGGATGGGCGCGAACTGAATTGTGTTAGCTGCTTCATGTGGGAGCTGGCTTGCCTGCGATAGCATCACCTCGGTTTAACTGAAGCACCGAGTCGC GAGCATCGCAGGCAAGCCAGCTCCCACATTGGATTTTCAGCGGAAAGAGATACGATGTATTCACTCGAAGACCTGCTGCACCTGATGAGCCGTCTGCGCG ACCCGCAATACGGCTGCCCGTGGGACATCAAGCAAACCTACGCGACCATCGTCCCGCACACGCTGGAGGAGGCCTATGAAGTGGCCGACGCCATCGAGCG CGGCGATTTCGATCACCTGCAAGGTGAGTTGGGCGACCTGCTGTTCCAAGTGGTGTATTACAGCCAACTGGCGCGGGAAGAAGGGCGCTTCGAATTTGCC GGCGTGATCGACGGCATCACCCGTAAGTTGATTCGCCGGCATCCTCACGTGTTCCCAACCGGCGACCTGTACGCACCGCTGGATATCCCGCAGTTGAGCG
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MVQVRAHQPINTDGSINLEAWLDHAVSVDPALDREALKAACEFARESEQQDNAAKNLWAEGTSSFRTGLEIAEILADLKLDQDSLIAAVLYRGVREGHIP LATVGQRFGSVVAKLIDGVLRMAAISASLSPRQSMVLGTQGQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL GIGHIKWELEDLSFRYLEPDQYKQIATLLHERRLDRERFISDVMGQLRSELQATGVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLVPEMRDC YTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAHWRYKGTDVKAGSNQYEEKISWLRQVLEWHEELGDI GGLAEQLRVDIEPDRVYIFTPDGHAIDLPKGATPLDFAYRVHTEIGHNCRGAKINGRIVPLNYSLQTGEQVEIITSKHGTPSRDWLNPNLGYITTSRARA KIVHWFKLQARDQNVAAGKTLLERELARLGLPQVDFDKLAEKANMKIAEDMFAALGAGDLRLAQLVNLAQQLVEPERGNEQLELIPRKATGYKPGKRGDI QIQGVGNLMTQMAGCCQPLPGDAIVGYITQGRGVSIHRQDCASVLQLGGREPERIIQVSWGPVPVLTYPVDIIIRAYDRSGLLRDVSQVLLNERINVLAV NTRSNKEDNTALMSLTIEIPGLDALGRLLGRISQLPNIIETRRNRTP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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