Pseudomonas sp. CF150, CF150_08920
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CF150 soap_scaffs_150.Contig15.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCAAGGAACGTATCAATATTACCTTCAAACCCGCGGTCGGTAGCGCTCAGGAAGATGTCGAACTGCCGTTGAAGCTGCTGGTGCTGGGGGATTTTTCCCA GCGCGCGGACCCACGCAAACTCGAAGATCGCAAGCCCATCGGTATCGACAAGCACACCTTTGACGAGGTGTTGGCCAAGCAAGCATTGAGCCTGACGCTG AGCGTTCCCAACCGCCTCCAGGATGCAGCCGACGTGGAAGAACTGCCGGTTCAGGTGCGAATTAACACCATGAAGGACTTCAACCCCGCGAACCTGGTGG AGCAGATCCCGCAATTGCAAAAGTTGATGGCATTGCGTGAGGCATTAGTGGCGCTCAAGGGACCGCTGGGCAATACGCCCAGCTTTCGCAACGCTATCGA GCGGGCGTTGGCCAATGGTGACTCTCGCGCACGAGTGCTCGCCGAACTGGGCCTGGATAGGCCTCAAGCCTGACGTTTTCAGTAAAAGGACACTGACACC
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| DNA Sequence for Gene |
>CF150_08920
ATGACCACCATTCAACACGGCACGCAACCCGTACAGGTTATCGAAAGCGGTAGCATCCTCGATAACATCATTTCCCAGACATTGCTCAGCGCCGACGACG AGGCTTATGGCATCGCCAAGCGCGGCGTGTCGGCGTTTATCGCAGAGCTGGTCAAGCCACATAATTGTGACGAACCCGTAAAGAAACGCCTGGTCGACCG GATGATCGCCGAGATCGACACCAAGCTCAGCGAACAAATGGATGAGATCCTTCACCATCCGGACTTCCAGGCGTTGGAGGCTTCGTGGCGAGGCTTGCAG TTGCTGGTCGATCGCACCAATTTTCGCGAGAACATCAAGATCGAACTGCTGAATGTTTCGCGCGAGGACCTGTTGGATGATTTCGAAGATTCATCGGAAA TTACCCAGTCCGGGTTATACAAGCACGTCTATAGCGCCGAATACGGTCAGTTCGGCGGTCAGCCAGTGGGCGCGATCATTGCCAATTACTTTCTTTCGCC CAGTGCGCCCGATGTGAAACTGATGCAATACGCATCCAGCGTCGCCGGCATGGCCCACGCGCCCTTTATCGCTGCAGCGGGGCCAAGTTTCTTCGGCTTG GAAAGCTTCACCGGGTTGCCCGACCTGAAGGATCTGCGGGACCATTTCGAAGGCCCGCAGTTTGCCAAATGGCAAAGTTTCCGGCAGAGCGAAGACGCAC GATATATTGGCCTCACCGTGCCGCGCTTTTTGCTGCGCACCCCGTATGACCCCCTTGAGTGCCCGGTCAAGACCTTCGCCTACCAGGAGAACGTGGTTAA CAGCCACGAGCATTACTTGTGGGGCAATACCGCCTATGCCTTTGCCACTCGCCTGACCGACAGCTTCGCGCGCTTTCGCTGGTGCCCCAACATTATTGGC CCGCAAAGCGGCGGGGCGGTCGAAGACCTGCCGCTGCATCACTTCCAGAGCATGGGCGAGATTGAAACCAAGATTCCTACGGAGGTGCTGATTTCGGACC GACGTGAGTACGAGCTGGCACAAGAAGGTTTCATCGCCTTGACCATGCGCAAGGGCAGCGATAACGCAGCGTTTTTTTCCGCCAGCTCCGTGCAGAAGCC CAAATCGTTCGGCATCAGTGAGGAGGGCAAGGCGGCAGAGCTGAATTACCGCTTGGGCACCCAATTGCCCTACATGATGGTGGTCAACCGCCTGGCTCAT TACCTCAAAGTGCTGCAACGGGAGCAGTTGGGCGCGTGGAAAGAGCGGACGGACCTGGAGTTGGAGCTCAACAAATGGGTTCGCCAATACGTGGCGGACC AGGAAAATCCTAGTGCCGAGGTGCGCGGGCGGCGCCCCTTGCGCGCTGCGCGCATTGTCGTCAGCGATGTCGAGGGCGAGCCTGGCTGGTACCGGGTCAA CGTTACGGTACGCCCGCATTTCAAATACATGGGGGCAGACTTCACGTTGTCCCTGGTCGGGAAGCTCGATAAAGAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAGAAGCCAGGGCATGCTTGAGCACAACAGCCTTTTCGAACGCCTCGAGCAGGGGGCGTCTAACCCGGGTGCCACCGTGGCGTCCATCGCCGCACATTT GGGGAAAATGCTCAGCACTCGTGCGGGCAGTGTCCAGACGCTGCCTGATTATGGCTTGCCTGACCTCAATGACATGCGGCTCAGCTTGCATGAGTCCTTG AGCCAGTCGCGGCTGCATATCGAACGTTTTATCCAGGCCTATGAGCCGCGGCTGACGAACGTACGTGTCAGGCTGTTGCCGGTTGTGCGTGACTCCTTGT CCCTGGCATTCGCCATTGAGGCTGAGCGGATGATTGCGGGCGTACTGCATCCTGTAGTGTTCCACGCGCGCCTCACGGATACCGGGCGGGTTGAGGTCTG TGCCAATGACGCTTAACCGTTATTTTCAAAGCGAACTCAGTGCGTTGCGCCAACTGGGGCGACGTTTTTCCGAACGTAATCCCGCCCTGGCGCCGTTTCT
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| Amino Acid Sequence |
>type VI secretion protein
MTTIQHGTQPVQVIESGSILDNIISQTLLSADDEAYGIAKRGVSAFIAELVKPHNCDEPVKKRLVDRMIAEIDTKLSEQMDEILHHPDFQALEASWRGLQ LLVDRTNFRENIKIELLNVSREDLLDDFEDSSEITQSGLYKHVYSAEYGQFGGQPVGAIIANYFLSPSAPDVKLMQYASSVAGMAHAPFIAAAGPSFFGL ESFTGLPDLKDLRDHFEGPQFAKWQSFRQSEDARYIGLTVPRFLLRTPYDPLECPVKTFAYQENVVNSHEHYLWGNTAYAFATRLTDSFARFRWCPNIIG PQSGGAVEDLPLHHFQSMGEIETKIPTEVLISDRREYELAQEGFIALTMRKGSDNAAFFSASSVQKPKSFGISEEGKAAELNYRLGTQLPYMMVVNRLAH YLKVLQREQLGAWKERTDLELELNKWVRQYVADQENPSAEVRGRRPLRAARIVVSDVEGEPGWYRVNVTVRPHFKYMGADFTLSLVGKLDKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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