Pseudomonas sp. CF150, CF150_08885

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. CF150 soap_scaffs_150.Contig15.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TTTCGGGTGACGATCGAAGGGCTGCAACAAGGTTTGCGCACCCGTGAAGAACTGAATAACGAACTGGGTATGGCGCCGTTCGCCAGTCAGGGCTCCGGCC AGAATCCCTTGAAAGTGTATAGCGACACCGATGCTGCTTTATCCGCGATGCTCGATACCCGGGAGTTGGGTCAACTGCCCGCGGTGCGCGCCATTGCCCA GGTGCACCTGGAACTGCAGGTGCATCAGGTTGCGTTGCTGGCCGCTTGTCGAAGCGCCATGCGTAATGCCCGCGCTGTCTTTGAACCCAGCCATCTGTTG GGGTGTTTTGCGTCCCAGGGCAAGCCTGCCGGGTTTTTCTCCGATGGCGGGCGGTGGCGTGCCTACCAGCGTTACTACCAGCGTGTGGTGGCGCAAGAAC AGTTGAATGATCGCCCGTTGGCCGGCGACTTCGCCAAGGCCTATGAGGAGCAGGTGCGCCTGATCTCCAGCCTGCACATTGATTTTCCAGGATGATAATC
DNA Sequence for Gene
>CF150_08885
ATGTATCGAGCCACCTTTGTTTCGTTGTTGCTCTTGTGCGGGCTGTTGGCGGGTTGCAGCGCCGTCTCGCCATTTTCCACGCTGACCAAGCTGGACGTGG TGCTGACTGCCAGCGAGCACGTCAACCCGGACTTGCACGGTCGTCCTTCTCCCGTGGTGGTGCAGTTGATCGAACTGCGCCATGGCGTTGCCTTTGAACA TGCCGACTTCTTCAGCCTGTATGGCAATGCGCAGCACACGCTGCCAAAGGACTGGGTCGGCAGCGAGGAGGTTGAGCTGCGCCCGGGTGACCGGCTGGCG CTCAAACTGCGCATCGCTCCCGATAGTCGTTTTGTGGGAGTACTGGCCGCTTTTCGAGACTTGCCCCATGTCCAGTGGCGGCTGCTGGTGCCCTTGACGG TACAGCAACGCAACCGTGTCGAGCTGGTGCTGGACCAGGGCGGTATACGTGTTGCTGACCCGCTCGCCGGTGTGGAGGCGCAATAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CATGCAGGTTCATAAAGTTATCTGGCAGGAAGGCATGCTGTTGCGGCCACAGCACTTGCAACACAACGACCGTTATTACCACCAGCAGCTCAATCAGACC CGCCTGCTGGGCAGTGACACCTGGGGTTTGCTCACGTTCGAACTCAATACGCAGTACCTCAAGTTGGGCAAGCTGGTGGTCAACCAGGCCAGCGGCGTGT TGCCGGACGGCAGCCTGTTTGACTTGAATGCTGCCATGGAGCCGCTGGTGGTGCAGGTGCCAGAGGGTTCGGGCGCGCAAGGGGTTTACCTGGCGCTGCC GCTGGTCAGCGGCAGTCACCTTGAAGCCCGCCGGCCTGAGCAAAGTGACGTGTTGGCGCGCTACCTCAGCTGTGAAGTGGAAGTGGGGGATTCCAACGTG GGGGCGGATACGCGTTGCCGAATCCACTGCGCGCGCCCGGACTTACGTCTTCTGTTGGGTGAACAGCCGGGTGACCAGCACTTCATCAAGCTCAAGGTGG
Amino Acid Sequence
>type VI secretion protein
MYRATFVSLLLLCGLLAGCSAVSPFSTLTKLDVVLTASEHVNPDLHGRPSPVVVQLIELRHGVAFEHADFFSLYGNAQHTLPKDWVGSEEVELRPGDRLA LKLRIAPDSRFVGVLAAFRDLPHVQWRLLVPLTVQQRNRVELVLDQGGIRVADPLAGVEAQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site