Pseudomonas sp. CF150, CF150_08875
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CF150 soap_scaffs_150.Contig15.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGCGCGCGCAGTTGGATGTTCACTATCAACACGGCGATCAGGGCGCCAGTTTTCGCGGGCTGATGGCGCAGGTGCGTACGGCACTGTCGGTGGTGCTGG AGCAACAGGCGATCAAGTTGGCATTGCAGCCTCGCCAGTACGGGGTGCTGGTATGCCCGGTCAGCGAGTTGAAACTGCTTGGCACAGCCACCTTCATCCT GGCGGCCACCGCGCAGTGTGAGGCGCAGGAATTGCGCCAGCGCCTGCCAGCCCACCTGAAAGTCGCGCCGGTTGAGCGCATACGCGAGTTGGTCAACCTG CACTTGGCCGGTATCAAGGTCAAGCCTTTGCCAGTGGCGCCGCGACAGATTCCTTTCCATGCCGGCAAGACCTATTTCGTGCTCGATATGAGCCCCCGTG ATATCGCACAGCTGGAACAGTCGGGTGGTTTCGCTTTCCACGTAGGGGGTGAGTTCACCGGGCTTGAACTCGACTTCTGGGCCATCAGGAACTGAATGCC
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| DNA Sequence for Gene |
>CF150_08875
ATGGACAGTGAATACACCCAGGATGAAAAAACCGTCCTGCTCGACCGGGAGACTCATGAGCCTGCCCAGGGGCCGTTGACGGATTTCCCATCGCCGCCGC GCTACGAACAGTTGGAAGACCGCATGATCTACGCCGGCCACAGGCTCGATACGCATAGCTTTCAGACAGGGCTCAACCCGCTGGTAGCCGCAGCCTTGGC GGTATTGTTCGAGGTTATTGGGATCAGGGTCTGCTCCGGCCGTGAAAACCTGGGCACGCTCAACGACCGATTAGTGTTGGCGGTGACTCAGTTCGAAACC CGCGCCTTGCAGGGCGGCGTGGAGAACAGCCAGGTCATGTCGGCGCGCTATGTGTTGTGCAGCGTGATCGACGAGGCGGTGGTGACGACACCGTGGGGGG CGCAAAGCGAATGGTCGAAGATGAGCCTGTTGAGCCGCTTCCATAACGAAACCTTTGGCGGCGAAAAAGTATTCCAGTTGCTGGAGCGCCTCACGCGCGA CCCGGTGAAGCACCTGGCGATGCTGGAGTTGCTGTATCTGTGCCTGTCCCTGGGGTTCGAAGGCAAATACCGGGTGATGGAGCGGGGCGTGACGCAACTT GAGGCTGTCCGCGATGCCTTGTATCGCCAGATCAGGCACGTACGTGGGGAGCCGGCGGCGCAAGCGCTACTGCCTGCCCAGCAGCGGACCGACCGGCGCA AGCAGGTGCGGGTCATCCCTGCCACTTGGTGGGTCGGCCTCACCTTGGTGTGTGTGTTGGCGATGTACACAGGGTTTGCCTGGGTGCTGAGCAACGAGCG TACAAACGCGCTGCACCCCCTTCAACTTTCGGCGTCGGATCTGGTCCGCACGCCCTTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGCTGGGAGCAATGAATGATCGCATTCTTCAAGGGGGTGGGCACCGTGCTGGGCAGGATTTGGGTGTGGAGCCTGTTGCTGGTGCTTTCCTGCGCGGCA ATGGTGTGGTTCTTGGGGCCGCTGCTGGCAGTGGATGATCACCGTATCTGGGCCGGGGCGACTGCTCGGTTGGTCACCATCAGCGGTGTGTTCTTGCTAT GGGGACTGGCGATGGCGTTTGTGGGCCCAGGTTTTGCCGCCTGGCGCCAAAGACCAGAACGCGAGGTGCGCCGACAGCCGATGACGCGGGTGGAGGACGA ACGCCGGCACCTGCGCAGTCGGTTCAAGAAAGCCGTGCACCTGCTCAAGATATCCCGCCATTATGGAGAGCGTAACGCGCGTTGGCGTCATGAGTTGCCC TGGTACCTGTTGATCGGTGAGCCGGGCAGTGGCAAGACACAGCTGCTGGCGGCAGCGGGCTTGCCGCTGGCGCTGGACCACGCGCAAACGCGGCCGATCG
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| Amino Acid Sequence |
>type VI secretion protein TssL2
MDSEYTQDEKTVLLDRETHEPAQGPLTDFPSPPRYEQLEDRMIYAGHRLDTHSFQTGLNPLVAAALAVLFEVIGIRVCSGRENLGTLNDRLVLAVTQFET RALQGGVENSQVMSARYVLCSVIDEAVVTTPWGAQSEWSKMSLLSRFHNETFGGEKVFQLLERLTRDPVKHLAMLELLYLCLSLGFEGKYRVMERGVTQL EAVRDALYRQIRHVRGEPAAQALLPAQQRTDRRKQVRVIPATWWVGLTLVCVLAMYTGFAWVLSNERTNALHPLQLSASDLVRTPL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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