Pseudomonas sp. CF150, CF150_02121

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. CF150 soap_scaffs_150.Contig2, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CAGGTCTTGTCCTTGATAGTGACACTGGAACCATTGGTCTTGACGCTGGCAATGCCATTGTCTCGTGCGGCTGTAGAGGTGTACTGCTCACTGCTGCCGA TCACTTGATGATTGGCAGCCTTGAGGTTGAAGAACGGCTGGCCGTTGCTGGCCACTTTTTTCTCATAACGTTCATCATGTGGGCTGTTTGCCTGCACTGA AGCAATGCCGGCTTCAGTAGCACCGCGGGTGGTGTAAAGCTCGCTGGTCAATATGGTTTCTGCGTTCGCCGCCTTAAGCACGAAACGAAACTGCCCGTTA CTGCTTTTACTCAACTCATACCATCCAGCCATGACTTTCTCCTTTGAGTGGGATATCGCTCCCAAACTTGTAGGATTAAAGGCCATGCCTCAATTTTTTC CAGCCAAACACGGGAGATCTATTTAGCCGGAGACAAATGACAATAATTCTCGATATCATTCGCGACTTTTCCACATCGTGCTTCGTCAAGAAGGATATCC
DNA Sequence for Gene
>CF150_02121
ATGTCTCGTCCCCAGCCCGACCCGTCGTCGGCCGATGCCTGTCGCGGGTTTTATGCAGACATTCTGTATTTCCTGCGCAAACGCACGGACAACGCCAGCG ATGCGGCAGACATGGCCCAGGATGTGTTTACCCAATGGCTGGGCTACCGCGACCGGGCCAAGGTCGAGCAGCCACGGGCGTTTCTGTTCCAGATGGCACG CAACCTGCTGCGCGATCACTGGCGTAAACAGAAGGTACGGCAAATCGTCCACCCTGATCACGCCGAAATGGATGCCGAGCCGGTCACCGACGAGCACAAC GACCCTATGGCCGCCGCCCTTCGCCTGCAACGCCTGGAACAGTTGAAAGAAGTCCTCGCCGAACTCTCGCCCCGCCGGCGAGAAGCCCTTATGCTGCACC GCTTCGAAGGCTTGAGCCAGGCGCAGATCGCAACGCGCATGGGCATCTCCACCAGCATGGTGGAAAAGCACATCGCCTTTGCCCTGCTGCACTGCAAGCG ACGCCTTCAACCCGACACCGGCACGGAGCAGCCAGAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACCGCCCGAGCGACACAAACGCGCTGGACAGCCAAGCGAGCGATTCCATCGATGCCCAGGCCGCCAGTTGGTTTGCACGCAACCGCAACGAAGTAAGCCG CGCCGACCGTAAAGCCTTTGCTGCCTGGCAGGCGGTGCCCGACCATGCGCGCGCCTATGCCGAATTCGAACAGTTATGGGCCGACCTCGCCCAGTTGCAA CAACTGAACAAACCGCTGGCACTGCCCAAGCGCAAGCCCGCCTTGTGGCGCCCTGCCCTGGCGGTGGCCGCTGCCTTGGTGTGCGCCGTGTTGGCGACCT CTATCGGCGCACCGCGCGAGCTGTATCACAGCCAGGTTGCCACCCAGGCCAAGGGCATGCGCACGTTGAATCTGCCGGATGGCAGTACCTTGTATGTGAA TGCCAACACCCATATCCGCGTGGACTTCAGCGCCCATCTACGGGTGCTGCACCTGGACAAAGGTCAGCTGTACCTTGAAGTGGCCGCCGACAAGGAACGC
Amino Acid Sequence
>putative RNA polymerase sigma factor
MSRPQPDPSSADACRGFYADILYFLRKRTDNASDAADMAQDVFTQWLGYRDRAKVEQPRAFLFQMARNLLRDHWRKQKVRQIVHPDHAEMDAEPVTDEHN DPMAAALRLQRLEQLKEVLAELSPRRREALMLHRFEGLSQAQIATRMGISTSMVEKHIAFALLHCKRRLQPDTGTEQPE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site