Pseudomonas sp. CFT9, CFT9_26176 (ihfB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFT9 soap_scaffs_T9.Contig62, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAACCAAGGCATTCAGCCCAATGTCAGAACTGACTATAGTCTTGAAAACGGCTATTTCGCGTTGCTGACTCAATAAGGGTTTGAATGAACAGAGTTATC GTAATACTCGCCTTGCTGGTACTTGCAGGCTGCTCCTCCACCAGTGCCAAGACACACGCGAAGCGCGGCGTCAGCGGCATCGAGGTCGACTGCTCTGGCC TGGGCAACAAGTGGGAAAAGTGCGAAAAGCGCGCCGCCCGTGAGTGCAAGATGCAGGGCTACAAGGTCATAACCCGCTCCAGCGATGCAGAGGACGAAGA GGGCGACTACCTGTTCGGCTGGAACCCTGCTGGTGCGGTGACGCGGACCATGTTGGTGATCTGTAAGTAAGGGGTTGGCTGCTTGCTGAACGTGTTTATT CAGCCTCAGATAAGTTGACACATGGGCTGTTCAAATTCATCAACTCATGCTAAAACCTTCGGAGCGCTTTTCCTAGCTGCTTGAAAAAGAAGGGAAAAAT
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| DNA Sequence for Gene |
>CFT9_26176
|ihfB
ATGACGAAGTCGGAGTTGATCGAACGAATTGTCACCCATCAAGGGCTGCTCTCATCCAAGGATGTGGAGCTGGCTATCAAGACCATGCTTGAGCAAATGT CCCAATGCCTCGCCACCGGAGATCGCATCGAAATCCGCGGCTTCGGCAGCTTCTCCCTGCACTACCGCGCACCACGCGTAGGCCGCAACCCAAAAACCGG CCAATCCGTCAGCCTCGACGGCAAATTCGTTCCCCACTTCAAACCGGGCAAGGAATTGCGCGATCGGGTGAACGAAGAAGAGGAAGAAGGCGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTGTTTTTGGGAAAGGAGAAGGGTATGCGTGGGGTTAAGCGCGTTGTTGCGGTGTTGATTGCAGTGCTTGCGGCTTTGGTGGTTCTGGCGTTTGTGCTGG AGAACCAGCAGGGCGTGGTGCTGTCATTCCTGGGGTGGAGTACTGCGCAGATGCCGGTGGCGGTGTTTGTGGTGGTGGCTTTGATCGTGGGGATGGTGAT TGGGCCGGTGTTGGCGGCATTTGTTCGTAGGCGTCCGAATAAGGCGATTGCCTAGAGGCCCTGGGAATAGAGGATTGATAGACCGTTTGTCAGAAAATTC TTTGTAATGGATCGGTTTGAGTTTTTCCCCGACTGCCCGCATGCTTAGCCTGGCTGGTTCAGACGGTTCCCCTTGAAAATCAGAATTTTCTTACATACAT GTCAAGACTTGTAATATGTCGGAGAGATGGCAGAATGGAATCTGTTCTCGATAACGGGCATTTTGTGCGCTTAAAATTCGGCAGAGACGCTGTTTTTTGA
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| Amino Acid Sequence |
>integration host factor subunit beta
MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRVGRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEEEEEGV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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