Pseudomonas sp. CFT9, CFT9_21348

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. CFT9 soap_scaffs_T9.Contig54, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GTCGCCCGCGCCCAATCGGCCCTGGCCGAAGCCCAAGTGACAGTGGACTCCGCCCAACTCAACCTCGACCGCTCGGTGATCCGCAGCCCTGTGGACGGCT ACGTCAACGACCGCGCACCGCGTACCCAGGAGTTCGTCACCGCCGGGCGCCCGGTGCTATCGGTGGTGGACAGCAATTCCTTCCACATCGACGGCTATTT CGAAGAGACCAAGCTCGACGGCATTCACGTAGGCATGGGTGTGGATATCCGTGTGATCGGCGACAACGCGCGCCTGCATGGCCACGTGCAGAGTATCGTC GCCGGTATCGAAGACCGCGACCGCAGCAGCGGCTCCAATCTGTTGCCCAACGTTAACCCGGCGTTCAGTTGGGTGCGCCTGGCCCAGCGGATCCCCGTGC GCATTGCCTTCGATGACGTGCCGGCGGACTTTCGCATGATCGCCGGGCGCACGGCGACGGTGTCGATCATTGACGACAAAGTTAAAGACGGGGGCAAACC
DNA Sequence for Gene
>CFT9_21348
ATGAAGCGGCTTCTGGCAACCGCTTCCCTGGGGTTGTTGCTGTCGGCCTGCCAAGTAGTAGGCCCGGATTACAAACTGCCGGAGCAGGCTGCGGTCAACC GTGGCGACCTCCAAGGGCCGATCATGGGCGAAGGCAAAAATGTAGTCTCGGCGCCAGTGCCAGCGGATTGGTGGAAGCTGTACAAAGACCCGCGCCTGGA CGAACTGGTGCGCCAGGCCATGGCCTCCAACACCGACCTGCGCGTGGCCGCCGCCAATCTGCAGCGCTCGCGTTATCAGGTGCAGCAGGCCGAATCCGCT GGCGGCTGGAGTGCCGGCGTCAAGGCCGAGGCCCAGCGTTTGCAGGAGTCTGGAGAGGCCTTCTTGCTGCCGGACAAAGTCCCGGTGGGCAATATCGGTA GCGTCGGGATTACCACGTCCTATCAATTCGACCTGTTCGGCACCTTGCAGCGTGGCATCGAGAGCGCCCAGGCCAGCGCCGACGCCACCCAGGCTGCGGC GGATATCGCCCGCATCACCCTGGTGGCCGATGTGGTGCGCTCCTATACCCAGGTGTGCGCGGCCAACGAAGAGCTGGCGATTGCCAACGAGTCCCTCGAC CTGCAAGCCCAGAGCACCAAACTGACCCAGCGCCTGCGGGATGCCGGGCGCGGCGACGAAACCCAGGTGACTCGCTCGCAAACCCAATACAAATCCCTGC GCGCCGACATACCGCGCTATGAAGCCTCGCGTCAGGCCGCGCTGTTTCGGCTGTCGATGTTGCTGGCCAAACCGGTCGACCAACTGCCAGCCGGCACGGG CACCTGCGCTGAGCTGCCGCATATCGCTCAACTGCTGCCGGTAGGCGATGGCGCCACGCTGCTCAAGCGCCGCCCGGATGTGCGCCAGGCCGAACGCCAG CTGGCCGCCGCCACCGCACGCATCGGCGTGGCGACCGGCGCGTTGTACCCGGACATCAGCATCGGCGCCACGGTAGGCACCGTGGGCCTGCTGGAAAACC TCGGCACGCCTGCCACTAATCGCTGGGGCTTTGGCCCAATGATCAGCTGGACTGTACCGACCAACGGCGCCCGCGCCCGCGTGCATGAAGCCGAAGCCGC GACCCAGGGAGCCCTGGCCCACTTCGACGGCGTGGTGCTCAACGCCATCCGCGAAACCCAGACCGGCCTGGCCCAATACACCGCCGTGTTGCAACGCCGC GACGCCCTGGCCGACGCCGAACAGTCGGCCCGAGAAGCGGCGGGCCAGACCCACCGCTTCTTCCAGGCCGGCCGCGAATCCTTCCTGGCCGACCTGCAAG CCACGCGCACCTACACCGATATGCGTGCGCAATTGGCGGCGGCCAACACCCAGGTTGCCATGAGCCAGATCGACCTGTTCCTGGCCCTGGGCGGCGGTTG GGAAAGCGGACGAACGCAAGGGCAAAAACCCGGCAAACCGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGTGATTGCTATGCTTTCTTGGGTGAGGCCCGCTGGCGCCTCACCCGACAAAGCTCGCGTTTGCTCATGGGGATTCCAAGAATGAAAAACCCTTATGCTC CCGCTTTCTGGTGCGTGCTCTTCGCACTGGTTTTGTTATCGGCCGCGTATTTTTACGGCGTCATGCTCGCCCATCAACTCGACAAGGCGATGGTGTTCCT CGACAGCGCCTGCCTGGTGATCGGCACTTTGTCCATCGGCGTGGTGGCCTGGGCGTCGTATCAAAACCAGCGGGTGAAGAAAAAACTCCTCGAGCAGGGC AAGACCCGCGTGGCGATCTGGGACACCAAGGTCGCCCTGCGCCGCGTCGAAACCGTGTTCGACCGCTATTTCTGGGGCAGTTACTGGCAGCCGGGGCGCA CGTTCCAGGAAGTCATGGGCGACCTCACCGGCACGCCGCTGGAAAAAAGCCTCGAAGTCCTGAAAAAACAATGCGTGCTGCTGGACCGACAGGTTGCCGA
Amino Acid Sequence
>RND transporter
MKRLLATASLGLLLSACQVVGPDYKLPEQAAVNRGDLQGPIMGEGKNVVSAPVPADWWKLYKDPRLDELVRQAMASNTDLRVAAANLQRSRYQVQQAESA GGWSAGVKAEAQRLQESGEAFLLPDKVPVGNIGSVGITTSYQFDLFGTLQRGIESAQASADATQAAADIARITLVADVVRSYTQVCAANEELAIANESLD LQAQSTKLTQRLRDAGRGDETQVTRSQTQYKSLRADIPRYEASRQAALFRLSMLLAKPVDQLPAGTGTCAELPHIAQLLPVGDGATLLKRRPDVRQAERQ LAAATARIGVATGALYPDISIGATVGTVGLLENLGTPATNRWGFGPMISWTVPTNGARARVHEAEAATQGALAHFDGVVLNAIRETQTGLAQYTAVLQRR DALADAEQSAREAAGQTHRFFQAGRESFLADLQATRTYTDMRAQLAAANTQVAMSQIDLFLALGGGWESGRTQGQKPGKP
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site