Pseudomonas sp. CFT9, CFT9_20055 (rplF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFT9 soap_scaffs_T9.Contig51, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGGCTCGCCTGAGCCCGTGTTTTTTGTGCTCGGAGATTCTCGGCGACATATGTAGCCGCAAGGCTAATTTTTTTGTATTAGGAGCGTCTAGCCCATGAG TATGCAGGACCCGTTAGCGGACATGCTAACTCGTATCCGTAATGCCCAGATGGCTGAAAAGTCCGTCGTAAGCATGCCATCTTCCAAGTTGAAGGTAGCT GTTGCCAAAGTCCTGAAAGACGAAGGCTACATTGCGGGTTATCAGATCAGCAGCGAAATCAAACCACTGCTGTCCATCGAGCTGAAGTACTTCGAAGGCC GTTCGGTCATCGAGGAAGTGAAGCGTGTTAGCCGTCCAGGCCTGCGTCAGTACAAGTCCGCTGAAGATCTGCCGAAAGTTCGTGGCGGTCTGGGCGTGTC TATCGTCTCCACCAACAAAGGTGTGATGACGGATCGTGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTACTTTGCACTGTGTTCTAAGGGGGGATAAGC
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| DNA Sequence for Gene |
>CFT9_20055
|rplF
ATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCAGCCGGTGTCGAAGTCAAATTCGCAGGCCAACAGCTTTCGGTGAAGGGTGCCAAGGGTACTCTTG AACTGAACATCCATTCGTCCGTTGAGATCGTTGAAGAAGCTGGTGAGCTGCGTTTCGCTGCTCGCAATGGCGATCAACAAACTCGCGCAATGGCCGGTAC CACGCGTGCGTTGGTAAACAACATGGTCCAAGGCGTAAGCCAAGGCTTCGAGCGTAAGCTCCAGCTGGTCGGTGTTGGTTACAAAGCGCAAGCAAAAGGC ACGGTTTTGAACCTTGCCCTTGGCTTCTCGCACCCAGTGGATTACGAACTGCCAGCGGGCATCACTGCTGAGACTCCTAGCCAGACCGATATCCTGATCA AGGGCATCGACAAGCAGCTGGTAGGTCAAGTGGCCGCTGAGATCCGCGACTTCCGTCCACCAGAGCCGTACAAAGGCAAAGGTGTGCGCTACGCGGACGA AGTCGTCCGTCGTAAAGAAGCCAAGAAGAAGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCATAGCAAATGACCGACAAAAAAGTTACTCGACTGCGTCGCGCTCGCAAAGCACGCCTGAAAATGCACGAACTCGAAGTCGTGCGTCTCTGCGTGTTC CGCTCGTCGCAGCACATCTACGCCCAGGTCATCTCGGCCGACGGCAACAAAGTCCTGGCAAGCGCCTCGACTTTGGATAAAGAACTGCGTGATGGTGCCA CTGGCAACATCGACGCGGCCACAAAGGTTGGCCAGCTGGTCGCTACGCGTGCTAAGGCCGCTGGCGTCTCGCAAGTGGCTTTCGACCGCTCTGGCTTCAA GTACCACGGCCGCGTGAAAGCGCTGGCTGATGCTGCTCGTGAAGCTGGGCTGGAGTTCTAAGTTATGTCAAATAACGACCAAAAGCGCGACGAAGGCTAC ATTGAGAAGCTGGTTCAAGTTAACCGCGTAGCCAAAACCGTTAAAGGCGGCCGTATCTTCACTTTCACCGCGTTGACCGTGGTGGGTGATGGTAAAGGGC
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| Amino Acid Sequence |
>50S ribosomal protein L6
MSRVAKNPVKLPAGVEVKFAGQQLSVKGAKGTLELNIHSSVEIVEEAGELRFAARNGDQQTRAMAGTTRALVNNMVQGVSQGFERKLQLVGVGYKAQAKG TVLNLALGFSHPVDYELPAGITAETPSQTDILIKGIDKQLVGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEAKKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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