Pseudomonas sp. CFT9, CFT9_19425
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFT9 soap_scaffs_T9.Contig51, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGCCAACCACATCGGATACGCCAACGCCTTCGGCCACGCGCCATCTGGACCGGGTAGAAAAAGTGGTGCTGGAATTTGCCAATGTCATCATCACGCTG GCGTCGGGAAATACTGAAGACCGGCTTGCCATGGGCGACGCCTGGCCCAAGGAGCGGGGGGCACGCTTGGATAACCTTGAGCAGTTACTGAGCATTTCGG AAACCCATATGAAGCAAGTGGCCGAGGATAACGGCATTATTTTCAAACCTCACCTCGAACCAGAAACCGCCCCAGGCACGGGGGGCCGCTTAGGCGTGAT AGAGCGCCGTTATCGCGCCTTGGAAAAGGCGGCTGACCGGATCATTACCCTGAAAGACGCGGAAGCCAAAAAAACCGAGGCCTCCGTTTAAGGCAGCCTT TTTGCCCGCCGGATCCTACCGGCGGGCGTTTCGCGCTCAGCTAAAGCGTGCGAACTTTCCCACCCTACGCTAACCTGCCTCGATGTTTACGAGGTCGACT
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| DNA Sequence for Gene |
>CFT9_19425
ATGCACATTCATATTCTGGGTATCTGCGGTACGTTCATGGGTTCGATGGCGGTTCTGGCCAAGGAGCTGGGCCATCATGTAACTGGCTCCGATGCCAATG TTTATCCCCCCATGAGCACGCAGCTACAGGCGCAAGGGATTGAGCTGACCCAAGGTTACGACCCCGCGCAATTCGACCCGGTGCCGGACCTGGTCGTGAT CGGCAACGCCATGTCGCGCGGCAATCCGGCGGTGGAATACGTACTGAACAAAGGCTTGCCTTACGTCTCCGGCCCCCAGTGGCTGGCCGACCATGTGCTG CAAGGCCGTTGGGTCCTGGCAGTGGCAGGCACTCATGGCAAGACCACCACCAGCAGCATGCTCGCCTGGGTGCTGGAGCATGCGGGCATGAGCCCGGGGT TCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGTATCAGCGCGCCTGGGTGAGACACCGTTTTTTGTGATCGAGGCCGACGAGTACGACAGCGCCTTTTT CGACAAGCGCTCCAAGTTCGTCCATTACCGCCCATGCACAGCGATCCTGAATAACCTTGAGTTCGATCACGCGGATATCTTCCCCGATCTGCCGGCGATT GAGCGGCAGTTCCACCACTTGGTGCGCACTATTCCAAGTGAGGGCCTTGTCATTCATCCCACCACCGAGCCTGCGTTGCAGCGTGTGATCGACATGGGCT GCTGGACCCCGGTGCAAACCACCGGCGCGGGCGGGCAGTGGCAGGCGAGGTTGCTCAGCGAAGACGGTTCGCGGTTTGAAGTGCTGTTCGAAGGCCAACC CCAAGGCATCGTCGATTGGGGCATGACCGGCCAACACAACGTGGCCAACGCTTTGGTAAGCCTGGCTGCCGCTCGGCATGTTGGCGTGGTACCAGCCATG GGCATTGCCGCCTTGAGCGCGTTCAAGAGTGTGAAGCGGCGCATGGAGAAAGTCGCTGAAGTAAATGGAATTACCATCTACGACGACTTTGCCCACCACC CGACCGCAATTGCCACCACCCTGGATGGCCTGCGCAAGCGCGTCGGCGATGCGCAGATCATTGCCATCGTCGAGCCGCGCTCCAACTCCATGAAGCTGGG TGCGCACCGTGATGGCCTGCCCGAAAGCGTCAACGATGCCGACCAGGTGGTGTGGTATGCACCGGCCAACCTTGGCTGGGATTTGCCCGCGATTGCTGCG CTGTGCACCGTACCCTCGACAGTCTGCGATTCGCTCGAAGGCATCATTGAGCATGTGAAGTCCTTGGCCCAGGCCGGCACCCACGTGGTGGTCATGAGCA ACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCACTGAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGGCCGGAACGCATTACCCTGGCGATGACCGGCGCATCCGGTGCGCCCTATGGCCTGCGCCTGCTCGATTGCCTGGTACGTGAAGACCGTGAGGTGCA TTTTCTGATCTCCAAGGCGGCGCAATTGGTGCTGGCGACCGAGACCGATGTCGCGCTGCCTTCCAAGGTGCAGATGATGCAGGCATTCCTCACCGAGTAC ACCGGCGCAGCGGCGGGGCAGATCAAGGTCTACGGCAAAGAAGACTGGATGTCGCCGGTAGCCTCAGGCTCCGGTGCGCCAGCGGCGATGGTGGTGGTGC CGTGTTCCACCGGCACCTTGTCGGCGATTGCCACGGGCGCCTGCAACAACCTGATCGAACGGGCGGCGGACGTGACCTTAAAGGAGCGCCGCCAATTGAT CCTGGTGCCGCGCGAAGCGCCGTATTCGAGCATTCACCTGGAGCACATGCTCAAGTTGTCGAACATGGGCGTGACCATCCTGCCCGCGTCGCCAGGCTTC
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSMAVLAKELGHHVTGSDANVYPPMSTQLQAQGIELTQGYDPAQFDPVPDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGETPFFVIEADEYDSAFFDKRSKFVHYRPCTAILNNLEFDHADIFPDLPAI ERQFHHLVRTIPSEGLVIHPTTEPALQRVIDMGCWTPVQTTGAGGQWQARLLSEDGSRFEVLFEGQPQGIVDWGMTGQHNVANALVSLAAARHVGVVPAM GIAALSAFKSVKRRMEKVAEVNGITIYDDFAHHPTAIATTLDGLRKRVGDAQIIAIVEPRSNSMKLGAHRDGLPESVNDADQVVWYAPANLGWDLPAIAA LCTVPSTVCDSLEGIIEHVKSLAQAGTHVVVMSNGGFGGLHGKLAEALK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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