Pseudomonas sp. CFT9, CFT9_17981 (fliN)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFT9 soap_scaffs_T9.Contig49, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATGGAAGTCAACTTCGAGTACATCAACTCGGAAGTGAACCCGGCCATGGCCAACATCGTCGGGCCGAGCGAGGCCATTGTGGTGTCGACCTTCCACATC GAACTCGATGGCGGTGGCGGCGACCTGCACGTGACCATGCCGTACTCGATGATCGAGCCGGTGCGCGAAATGCTCGACGCCGGCTTCCAGTCCGACCTCG ACGACCAGGACGAACGCTGGGTCAAGGCCCTGCGCGAAGACCTGCTGGACGTCGACGTGCCGTTGAGCGCCACCGTGGCCCGCCGTCAGTTGCGCCTGCG CGATATTTTGCACATGGCGCCTGGGGACATCATCCCCGTCGACTTGCCGGAAGAGTTGATCATGCGCGCCAACGGCGTGCCGTCATTCAAGGTCAAGCTC GGTTCCCACAAGGGCAACCTGGCGCTGCAAGTGGTTGAGCCGATCAACCGCCGCTGATTCAACCCCAATTCATGATTGTTTGCTGCGCCGAGGACATGTA
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| DNA Sequence for Gene |
>CFT9_17981
|fliN
ATGGCTACCGAACACGAAAACACTTCCGCCGAAGACCAGGCGCTGGCTGACGAGTGGGCTGCGGCCCTGGAAGAAACCGGCGATGTTGGCCAGGACGACA TCGACGCGCTGCTGGCCGCCGACGCCGCTACCGCGCCGGCCGGCAACCGTCTGGCCATGGAAGAATTCGGCAGCGTGCCGAAGAACAACGACCCGGTGAG CCTCGACGGCCCGAACCTGGATGTGATCCTCGACATCCCGGTGTCGATTTCCATGGAAGTGGGCAGCACCGAAATCAACATCCGCAACCTGTTGCAGCTC AACCAGGGCTCGGTGATCGAGCTGGACCGCTTGGCCGGCGAGCCGTTGGACGTGCTGGTCAACGGCACCCTGATTGCCCATGGCGAGGTGGTGGTGGTCA ACGAGAAGTTCGGCATCCGCCTGACCGACGTGATCAGCCCGAGTGAACGCATCAAGAAGTTGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GATGAAGTACTCGATGGCGGGACTGTTGCTGGCGCTGCCATTGAGCGCCCTGGCGGCGGAGCCGGTGGCGCAGGTGGCTGCGGCGCCAGCGGTCGGCAGT GTCAGTGGGCAGTTGACGCAACTGGTGCTGGGCCTGTTGCTGGTGATTGGCCTGATCTTCGTGCTGGCCTGGTTGATGCGCCGCGTGCAGCGCATCGGCC CGGGCAACGGCCAAGTGATCGAGCTGGTGGGCTCGCGCGCCCTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCGAGGAGCAGATCCTGCTCGG CATCACCCCCGGCCGCATCACCCCGCTGCATGTACTCAAGACCCCGGTGGACGCGGTAAAGACCGAAGCCGCCACGCCAGAATTCGCCCAGCGCCTGATG GAGTTGCTGGGCAAGGATCAGAAGGATAAGAAGTAATGCGCGTTTTGTTGACGCTCATGCTGTTGCTGGCCGCACCGATGGCCCTGGGCGCCGACCCGTT
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| Amino Acid Sequence |
>flagellar motor switch protein FliN
MATEHENTSAEDQALADEWAAALEETGDVGQDDIDALLAADAATAPAGNRLAMEEFGSVPKNNDPVSLDGPNLDVILDIPVSISMEVGSTEINIRNLLQL NQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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