Pseudomonas sp. CFT9, CFT9_17961 (fliR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. CFT9 soap_scaffs_T9.Contig49, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCCGAACTGAAGACCGCGTTCCAGATTGGCTTCATGATCTTCATCCCGTTCCTGATCATCGACCTGGTGGTGGCGAGCGTGCTGATGGCCATGGGTATGA TGATGCTGTCACCGTTGATCATCTCGCTGCCGTTCAAGATCATGCTGTTTGTGCTGGTGGACGGCTGGGCGCTGATTATTGGCACCCTGGCCGGCAGTTT CGGAGGGGTATAGCGCTATGACGCCAGAAGTCGCCGTTGACCTGTTCCGTGAAGCGCTGTGGCTGACCACCCTGATGGTCGCCGTGCTGGTGGTGCCCAG TCTGTTGGTGGGCCTGCTGGTGGCGATGTTCCAGGCGGCCACCCAGATCAACGAACAAACCCTGAGCTTTCTGCCGCGCCTGCTGGTGATGCTGGTGACC CTGATCGTCGCCGGCCCGTGGCTGGTGCAAACCTTCATGGAATACATCCTGCAGTTGTACGGCAGTATTCCGCAGTTGATCGGCTGAGCCGATGCAATCC
DNA Sequence for Gene
>CFT9_17961 |fliR
TTGCTGGCCTTGACCGACACCCAGATCAGTACCTGGGTGGCCTCGTTCATCCTGCCGCTGTTTCGCGTCACGGCGATGTCGATGGCCATGCCGGTGTTCG GCACCACGTTGGTACCGCGTCGTGTGCGCCTGTATTTCGCTGTGGCGATCACCGTGGTGATCGTGCCGGGCCTGCCGCCGATGCCGCCGGTGAACGCACT GGACCTTAGCGCCTTGTTGCTGATTGCCGAACAGATTCTGATCGGCGCCATGCTGGGGTTTTCCCTGACCCTGTTCTTCCAGGCTTTCGTGGTGGCCGGG CAAATCATCTCGATCCAGATGGGTATGGGCTTCGCTTCAATGGTGGACCCCACCAACGGCGTGTCGGCGGCGGTGATCGGGCAGTTTCTGACCATGCTGG TGACCTTGCTATTCCTGGCCATGAACGGTCACCTGGTGGCGTTCGAGGTGCTGACCGAGAGTTTCACCACCTTGCCGGTGGGCGCAGGCTTGGTGGTCAA CCACTTCTGGGAACTGGTGGGGCGCCTCGGTTGGGTGCTGGGCGCGGCGCTGTTGCTGGTGTTGCCGGCGATCACGGCGCTGCTGGTGGTCAATATCGCG TTCGGCGTGATGACCCGCGCGGCGCCGCAACTGAACATCTTCTCGATTGGTTTCCCGCTGACCCTGGTGTTGGGCATGGGGATTTTCTGGGTCGGCCTGG CTGACATTCTCAATCAGTATCAACCGCTGGCCACCGACGCCTTGCAGTTCTTACGTGACCTGGCACGGGCGCGCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCATGGCCGAGAGCGAGAGTGGTCAGGACAAAACAGAAGACCCCACGGAGAAACGTAAAAAGGACTCCAGGGAAAAGGGCGAGATCGCACGCTCCAAAG AGCTCAACACTTTCGCCACCATGATCGCCGGTGCCGGGGCCTTGTTGATCTACGGGGGAGGCCTGGCGCTGGACCTGCTGGAGATGATGAAGCACAACTT CAGCTTGCCCCGCGAAGTGCTGCTCAACCCCGACGCCATGGCCCAGTACCTGCTGCACTCAGGCAAAATCGCCCTGTTGGCGGTGCAGCCGATCTTGATC ACTTTGCTGCTGGCCGCGCTGATCGGCCCGGTCGCCCTCGGCGGCTGGTTGTTTGCCGCGGGCAGCATGGCGCCCAAGTTCAGCCGCATGAACCCGGGGG CGGGGCTCAAGCGCATGTTCTCTGCCAAGGCCCTGATTGAATTGCTCAAGGCCCTGGCCAAGTTTTTCCTGATTCTGTTCGTGGCGTTGGCGGTGTTGTC
Amino Acid Sequence
>flagellar biosynthesis protein FliR
MLALTDTQISTWVASFILPLFRVTAMSMAMPVFGTTLVPRRVRLYFAVAITVVIVPGLPPMPPVNALDLSALLLIAEQILIGAMLGFSLTLFFQAFVVAG QIISIQMGMGFASMVDPTNGVSAAVIGQFLTMLVTLLFLAMNGHLVAFEVLTESFTTLPVGAGLVVNHFWELVGRLGWVLGAALLLVLPAITALLVVNIA FGVMTRAAPQLNIFSIGFPLTLVLGMGIFWVGLADILNQYQPLATDALQFLRDLARAR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site