Pseudomonas sp. CFT9, CFT9_15527
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 716 | 751 | 1.4E-5 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 767 | 945 | 4.5E-24 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 657 | 688 | 6.8E-4 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 946 | 1331 | 8.3E-71 |
| Pfam | PF03527 | RHS protein | IPR001826 | RHS protein | 1227 | 1262 | 8.7E-16 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 888 | 919 | 0.0079 |
| Gene3D | G3DSA:2.60.200.60 | - | - | - | 158 | 225 | 2.7E-14 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 712 | 747 | 5.0E-7 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 732 | 771 | 1.7E-4 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 690 | 722 | 0.0036 |
| NCBIfam | TIGR03696 | JCVI: RHS repeat-associated core domain | IPR022385 | Rhs repeat-associated core | 1253 | 1331 | 4.8E-25 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 605 | 645 | 1.5E-4 |
| Pfam | PF20148 | Domain of unknown function (DUF6531) | IPR045351 | Domain of unknown function DUF6531 | 296 | 370 | 6.3E-22 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 932 | 967 | 4.6E-5 |
| PANTHER | PTHR32305 | - | - | - | 553 | 1352 | 5.8E-35 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1220 | 1240 | 1.6E-13 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1300 | 1319 | 1.6E-13 |
| Pfam | PF05488 | PAAR motif | IPR008727 | PAAR motif | 169 | 212 | 1.6E-9 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1277 | 1297 | 1.6E-13 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 533 | 766 | 4.2E-30 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 492 | 528 | 3.7E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1140 | 1171 | 4.7E-7 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 817 | 848 | 1.2E-4 |
| CDD | cd14742 | PAAR_RHS | - | - | 104 | 225 | 1.87776E-30 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 816 | 854 | 2.0E-4 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 775 | 812 | 2.3E-4 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.