Pseudomonas sp. CFT9, CFT9_15507

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. CFT9 soap_scaffs_T9.Contig47.2, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGGGACCTGCCGCTGTTCATGAGCGTGGGCAACGGCAAGACCGACTTCACCCTGGCCGACAGCGCGCCGGTACTGGCCGTGCGATGCGTCGCCGGGCCAA GCCGCCCGCGTGCCAGCCACGCACATGACGCCAAGGCCTGGCGCCTGATCAGCCAGTTGTCGCTCAACTACCTCTCCTTGAGCGAACAGGGCCAGGGCGC CGGCGCCTTGCGCGAATTGCTGCGCCTGTACGGCGACAGCAATGACGCCGCCCTGCAATTGCAGATCGAAGGCCTGCGCGAAGTCAGCAGCAAGGCGGTG ACCCGACGCCTGCCGATGCCTGGCCCGATTGTGTTTGGCCGCGGCCTGGAAATCACCCTGGAGTTCGATGAAAACGCGTTTCGCGGCACCGGCGTGTTCC TGCTCGGTGCAGTGCTGGAGCGCTTCCTGGCACGCTACGTGTCGATCAACAGCTTTACCGAGACGGTGATCCGTACCACCGAACGCGGCGAGATCATGCG
DNA Sequence for Gene
>CFT9_15507
ATGGAAAGCCAAGCCCGGACGGCGTCCGACCCTGTGAGAACCCTGGACGCGATGCACCAGGAGCCCTGGGAATATGACTTCTTCCAGGCATTGCGGCGCA TCGAGTGCGAAACGCCCGAGCTGCCACGCCTGGGCCATTCCCTGCGCCTGGCCGATGATCCGCTGCGCCTGGGGCAGCAGGCCGATTGCACCTTCGCACC CGCCACCCTCGCCTCGGTCGCCCCCGGTGGCGACGGCAAGCCGGCGCGGTTGGAGCAGTTCTTCTTCGGCCTTGGCGGCCCCAACGGGCCGCTGCCGCTG CACATCACCGAGTACGTGCGCGAGCGCCAACGCAACAACGCCGACAGCACCAGCAAGCAGTTCCTGGATGTGTTCCACCATCGCTTGTTGACCCTGTTCT ATCGGGCCTGGGCCGAGGCGCGGCCAACGGTCAGCCATGACCGCCCGGACGATGACTACTGGTCCGCCCGCCTCGCCGCCCTGAGTGGCCGCGGGATGCC GAGCCTGCTCAATCAAGGGCTGATCCCCGATACCGCGAAGCTGCATTACAGCGGCCATCTGTCGGCGCAAACCCGTTACCCGGATGGCTTGAAAGCGATC CTGGGCGAGTACTTCGGCCTGCCGGTAGAGATCGAGGAATACGTCGGCCAATGGCTTGAACTGCCCGAACGCAGCCGCGTGGGGGTCAGCGCCAACCAGT TGGGCGTGGACTTCTGCCTGGGCAGCCACGTATGGGACCGCCAGCACAAATTCCGCATCCGCCTGGGCCCGCTCACGCTGGATAACTACATGGGCATGCT GCCCGGCCAACAGCCGTTCAACGAGCTGGTGGCGTGGGTGGCCGAGTACCTGGGCCATGAATTGGACTGGGACTTGAACCTGGTTTTGCAACAACCCGAA GTACCGGCGCTGCAACTCAACGGCCAGTTCCGCCTGGGCTTCAACACCTGGCTCGGCCAACCTGCGCATGACGCCAACGACCTAATCCTGGCCCGGCATT ACGCCGACCACGCCACCACCTCAAGGAATCCAGAGCATGGGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AATCAGTCGCGCCGCACTGTTCGGCAAACTCAACAGCGTGGCCTACAAAGCCATCGAAGCCGCCACCGTGTTCTGCAAATTACGGGGCAATCCGTATGTG GAACTGGCCCACTGGTTTCACCAGTTGTTGCAACTGCAGGACTCCGACCTGCACCGCATCATCCGCCAGTTCAACGTGGAGCCGGCGCGCCTGGCCCGCG ACCTCACCGAAGCCCTGGACCGCCTGCCGCGCGGCTCCACGTCGATCACCGACCTGTCCTCCCATGTGGAAGAGGCCGTAGAACGCGGCTGGGTGTATGG CAGCCTGATGTTCGGTGAAAGCCAGGTTCGCACCGGTTATCTGGTGCTGGGCATCTTGAAGACACCGAGCCTGCGCCATGCGCTGCTGGGCCTGTCCGGC GAGTTCGACAAGATCAAGGCCGAGGCCTTGAGCGAGCGCTTTGACGAATACGTCGGTGACTCGCCGGAAAATGCCTTGAGCGCCAGCGACGGTTTCAATG
Amino Acid Sequence
>type VI secretion protein
MESQARTASDPVRTLDAMHQEPWEYDFFQALRRIECETPELPRLGHSLRLADDPLRLGQQADCTFAPATLASVAPGGDGKPARLEQFFFGLGGPNGPLPL HITEYVRERQRNNADSTSKQFLDVFHHRLLTLFYRAWAEARPTVSHDRPDDDYWSARLAALSGRGMPSLLNQGLIPDTAKLHYSGHLSAQTRYPDGLKAI LGEYFGLPVEIEEYVGQWLELPERSRVGVSANQLGVDFCLGSHVWDRQHKFRIRLGPLTLDNYMGMLPGQQPFNELVAWVAEYLGHELDWDLNLVLQQPE VPALQLNGQFRLGFNTWLGQPAHDANDLILARHYADHATTSRNPEHG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site