Pseudomonas sp. CFT9, CFT9_15487
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFT9 soap_scaffs_T9.Contig47.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAAGTTCTCAGAAATTCATCGCGCGCAACCGTGCGCCTCGAGTGCAGATCGAGTACGACGTCGAGCTTTACGGCGCCGAGAAAAAGGTCCAGCTGCCCT TCGTGATGGGCGTGATGGCCGACCTCGCCGGCAAGCCTGCCGAGCCGCTGGCACCCGTGGCCGACCGCAAGTTCCTTGAGGTGGACGTCGACAACTTCGA CTCACGCCTCAAGGCCATGCAGCCACGCGTCGCGTTCCACGTACCCAATGAGCTGACAGGCGAAGGCAACCTGAGCCTGGACATCACCTTCGAAAGCATG GACGACTTCAGCCCGGCCGCCGTGGCCCGCAAGGTCGACTCCCTGAATCAGCTGCTCGAAGCCCGCACCCAATTGGCCAACCTGCTGACCTACATGGACG GCAAGACTGGCGCTGAAGAAATCATCATGAAGGCGATCAAGGACCCGGCATTGCTTCAGGCACTTGCCAGCGCGCCCAAGCCTGCAGGGGAGCAGTAATC
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| DNA Sequence for Gene |
>CFT9_15487
ATGACGGACAATACCGCCCGCGAAGGCAGCCAGATCCTGGGTACCACCGAAGAAGCCAGCGAGTTCGCGAACCTGCTGCTGCAAGAATTCAAACCCAAGA CCGAGCGTGCCCGCGAAGCCGTTGAAACCGCGGTGCGCACCCTGGCTGAACAGGCCCTGGCGCAAACCGACCTGGTGTCCAACGACGCGATCAAGTCGAT CGAATCGATCATCGCCGCCATCGACGCCAAGCTCACCGCCCAGGTCAACCAGATCATCCACCACCAGGATTTCCAACAACTGGAAAGCGCCTGGCGTGGC CTGCATTACCTGGTCAATAACACCGAGAGCGATGAGCAACTGAAGATTCGCGTGCTCAACATCTCCAAGCCAGACCTGCACAAGACCCTGAAGAAATTCA AGGGCACCGCGTGGGACCAGAGCCCGATCTTCAAGAAGATGTACGAAGAAGAATACGGCCAGTTCGGTGGCGAACCTTACGGCTGCCTGGTGGGTGACTA CTACTTCGACCAGTCGCCGCCCGACGTGGAACTGCTGGGCGAGCTGTCAAAAGTCTGCGCCGCCATGCACTCGCCTTTCATCGCTGCGGCCTCGCCGACC GTGATGGGCATGGGTTCGTGGCAGGAACTGTCGAACCCACGCGACCTGACCAAGATCTTCACCACCCCGGAATACGCCGGCTGGCGCTCGCTGCGTGAAT CGGAAGATTCGCGCTACATCGGCCTGACCATGCCGCGCTTCCTGGCACGCCTGCCGTACGGCGCCAAGACCGACCCGGTAGAAGCCTTCGCCTTCGAAGA AAACACCGACGGCGCCGACAGCTCCAAGTACACCTGGGCCAACGCCGCCTACGCCATGGCAGTGAACATCAACCGTTCGTTCAAGCACTACGGCTGGTGC TCGCGCATCCGCGGTATCGAGTCTGGTGGTGAAGTGGAAAACCTGCCGGCCCACACGTTCCCTACCGATGACGGTGGCGTGGACATGAAGTGCCCGACCG AAATCGCCATCAGTGACCGCCGTGAAGCGGAACTGGCGAAGAACGGTTTCATGCCGCTGCTGCACAAGAAAAACACCGACTTCGCCGCGTTCATTGGCGC CCAGTCGCTGCAAAAGCCTGCCGAATACGACGACCCGGACGCCACCGCCAACGCCAACCTGGCCGCACGCCTGCCGTACCTGTTCGCCACCTGCCGTTTC GCCCACTACTTGAAGTGCATCGTGCGCGACAAGGTCGGCTCCTTCAAAGAGAAGGACGAAATGCAGCGCTGGTTGCAGGACTGGATCCTCAACTACGTCG ACGGCGACCCGGCGCACTCCACCGAAACCACCAAGGCCCAGCACCCGTTGGCGGCGGCCGAAGTGATCGTGGAAGAAGTCGAAGGCAACCCGGGGTATTA CAACTCCAAGTTCTACCTGCGCCCGCACTATCAGCTTGAAGGGCTGACGGTGTCGTTGCGCCTGGTATCGAAACTGCCTTCGGCAAAAAGCGCATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTAACGATTGAGCTAGCTCGTTCCCACGCTCCGCGTGGGAATGCCGCCCGGGACGCTCTGCGTCCCGGTGACGCGTAGCGTCACAGGATGCGTTACCACG CAGAGCGTGGGAACGATCACCCAATCAAGTGGCATGGGCCACACAGGGAGAAAACATGGCTGTTGATATTTTCATCAAGATCGGCGACATCAAGGGCGAG TCCATGGACAAGGCCCACAAGGACGAAATCGATGTGTTGAACTGGAGCTGGGGCATGTCCCAGTCCGGCAACATGCACGTCGGCGGTGGCGGTGGCGCGG GCAAGGTGAATATCCAGGACCTGTCGCTGACCAAGTACGTCGACAAGGCTTCGCCCAACCTGATGATGCACTGCGCCAGCGGCAAGCACATCGACAAGGT CAAGCTGACCGTGCGCAAGGCCGGTGGCGAGAGCCAGGTCGAGTACATGGTGATCAACCTGGAAGAAGTGCTGGTCACCTCCTTGAGCACCGGCGGTTCG
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| Amino Acid Sequence |
>EvpB family type VI secretion protein
MTDNTAREGSQILGTTEEASEFANLLLQEFKPKTERAREAVETAVRTLAEQALAQTDLVSNDAIKSIESIIAAIDAKLTAQVNQIIHHQDFQQLESAWRG LHYLVNNTESDEQLKIRVLNISKPDLHKTLKKFKGTAWDQSPIFKKMYEEEYGQFGGEPYGCLVGDYYFDQSPPDVELLGELSKVCAAMHSPFIAAASPT VMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYIGLTMPRFLARLPYGAKTDPVEAFAFEENTDGADSSKYTWANAAYAMAVNINRSFKHYGWC SRIRGIESGGEVENLPAHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDFAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRF AHYLKCIVRDKVGSFKEKDEMQRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVIVEEVEGNPGYYNSKFYLRPHYQLEGLTVSLRLVSKLPSAKSA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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