Pseudomonas sp. CFT9, CFT9_14323

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46894
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00421
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 186 200 1.1E-6
CDD cd06170 LuxR_C_like IPR000792 Transcription regulator LuxR, C-terminal 186 242 4.81507E-14
Pfam PF03472 Autoinducer binding domain IPR005143 Transcription factor LuxR-like, autoinducer-binding domain 44 135 1.3E-15
Pfam PF00196 Bacterial regulatory proteins, luxR family IPR000792 Transcription regulator LuxR, C-terminal 186 238 1.4E-14
SUPERFAMILY SSF46894 C-terminal effector domain of the bipartite response regulators IPR016032 Signal transduction response regulator, C-terminal effector 180 246 5.1E-16
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 200 216 1.1E-6
SMART SM00421 luxrmega5 IPR000792 Transcription regulator LuxR, C-terminal 183 240 5.5E-12
SUPERFAMILY SSF75516 Pheromone-binding domain of LuxR-like quorum-sensing transcription factors IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily 30 139 2.22E-17
PANTHER PTHR44688 - - - 190 245 1.7E-10
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 216 228 1.1E-6
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 185 246 3.8E-16
Gene3D G3DSA:3.30.450.80 - IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily 12 175 4.5E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.