Pseudomonas sp. CFT9, CFT9_13863
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFT9 soap_scaffs_T9.Contig45, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCGTACTCGATGGCTGGGCCGTCGCCACCCAGTTGCGGCGCCTCGGCAGTGCCGGTAATCGGCAACACTTCAAGATACAAATCTTCGGTCAGGCGCTG GTTGAGGCGCAGTTCCTCGCGGCAGAAATGCCCGCGGTCGTCCAGATTGGTGAAGTCCAGGAAGCCGAAGTTCATCGGTTTCTTCAGCTTATATGCATAG GGGCCCGTCAGTATCACCCAGGAAATATGGGTCTCGATGACTTGAAACGCGTCAACCGGATGAGGGTACAAGGCCGGGTTTTGCAGGGCAGCGATCAGGG TCTGGCTCACGGGCGATCCTTCAAAGTCGGGGGAAAATCATGGGGGGCATTATGGCTGCTGATGCCAGTCGTGCAAACCGCTGTCCGGCTCATGTTGATC ATCAATAAAGTGCGTATAATCCGCCGCCATGACTCGAACCCGATCTCCCCGTTCCCGTAAAAAACCTCCTTCCCGCGGCCCGCGCCCTTGGCTGGGCTGG
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| DNA Sequence for Gene |
>CFT9_13863
GTGATCAAGCTTGGCCTGGTGGGCCTTGTGGCGGTCGCCGGCCTTGCGGTGTACCTCGATGCCGTGGTGCAGGAAAAATTCTCCGGCAAGCGCTGGACGA TTCCGGCCAAGGTGTATGCACGCCCGCTGGAGCTGTTCTCTGGTCAGAAGCTGAGCAAGGAAGACTTCCTTACCGAGCTCGATGCGCTGGGCTACCGCCG CGAACCCGTGAGCAATGGCCCTGGCGCTGCGGCGGTCAGCGGTAATACCGTCGACCTGAACACCCGTGGCTTCCAGTTCTACGAAGGCCTGGAAAAAGCC CAGCCGGTGCGCGTGCGTTTCTCTGGCGATTATGTGGCTGAGCTGTCCTCGCTCAATGGCTCCAAGCTGCCGGTGGTGCGTCTTGAACCGTTGCTGATCG GCGGTATTTACCCGAAGAACCTTGAAGATCGCATCCTGATCAAGCTCGATCAGGTACCGCCGTATCTGCTGGAAACCCTGGTCGCTGTCGAAGACCGCGA TTTCTATAGCCACTGGGGTGTTTCTCCGAAGTCGATTGCCCGCGCTATCTGGGTCAACACTTCCGGCGGCAAGATGACTCAGGGCGGCAGTACGCTGACG CAGCAACTGGTCAAGAACTTCTACCTGACCAACGAGCGCAGCCTGACCCGTAAACTCACCGAAGCCATGATGGCGATGTTGCTGGAGCTGCATTACAGCA AGCAGGAAATCCTCGAGGCTTACCTCAACGAGGTATTCGTCGGGCAGGATGGCCAGCGCGCCGTGCACGGTTTTGGCCTGGCCAGCCAGTTCTTCTTCGG GCAGCCGTTGTCCGAATTGAAATTGCATCAGGTTGCGTTGCTGGTGGGGATGGTCAAGGGGCCGTCCTATTACAACCCGCGCCGCAACCCGGAGCGTGCG CTTGAACGTCGCAACCTGGTGCTCGATGTACTGGAGCAGCAGGGTGTGGCCACCGCTGAACAAGTGGCTGCTGCGAAAAAAATGCCACTGGGTGTGACAA CCCGCGGCAAGCTGGCGGATAGCTCGTTCCCGGGCTTTATCGACCTGGTCAAGCGCCAACTGCGCGAAGACTACCGCGACGAAGACTTGACCGAAGAGGG GCTGCGGATCTTCACCAGCTTCGACCCCATCCTGCAGATGAAGGCCGAAGCATCGGTCAACGACACCTTCAAGCGCCTGACTGGCCGTAAAGGCTCGGAT GAAGTCGAAGCCGCCATGGTCGTGACCAACCCGGAAACCGGCGAGGTCCAGGCCATGATCGGCAGCCGCCAGGCCAGTTTTGCAGGCTTTAACCGCGCAC TGGATGCCGTGCGGCCGATTGGCTCGCTGGTCAAGCCCGCGGTCTATCTCACGGCACTGGAAAAACCCAGCAAGTACACGCTGACCAGTTGGCTGTCCGA TGACCCGCTGTCGATCAAAGGTGCGGATGGCCAGGTATGGACGCCCAAGAACTTCGACCGCCGCTCTCATGGCACGGTGTTCCTGTATCAAGGATTGGCG CATTCCTACAACATCTCGACCTCGCGCCTGGGGCTTGAAGTCGGTGTGCCGAATGTGCTGAAGACCCTGGCGCGACTAGGGATCGAACGTGAGTTCCCGG CGTTCCCGTCCATGCTTCTGGGCGCTGCGGCCATGACGCCGATGGAAGTGACCACCATGTACCAGACCCTGGCCAATGGTGGCTTCAATACGCCGATGCG CGGTATTCGCAGTGTGCTGACCGCCGATGGCGAACCGCTCAAGCGCTACCCGTTCCAGATTCAGCAGCGCTTCGACGCCGGCTCCATCTACCTGATCCAG AACGCCATGCAGCGCGTGATGCGCGAGGGTACGGGGCGTTCGGTCTACAGCGTGCTGCCGTCGAACCTGACCCTGGCGGGCAAGACCGGTACCAGTAACG ACTCCCGCGACAGCTGGTTCGCAGGTTTCGGCCAGGATGTATTGGCCGTGGTATGGCTGGGGCGCGACGACAATGGCAAGACGCCGTTCACCGGTGCCAC CGGCGCGCTGCAGGTATGGACCAGTTTCATGCGCAAGGCTGACCCGTTGCCGCTCAACATGCCGCAGCCGGACAATATCGTGCAGGCCTGGATTGATCCG CACACCGGCCAAGGCTCCGATGCCAACTGTCCGGGCGCGGTGCAGATGCCGTATATTCGCGGCAGCGAACCACCACCCGGCGCCGCGTGCAGTGGCAGTG CCCCTGCTGACGCGGATTCGGTGATGGATTGGGTCAAGGGCTGGATGAATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAAGAGGGTTTCAAGTGAACAAGTTGTGGATTCCAGCCATTACGGCTCTGGCTTTGCTCGGCGGTTGCTCCAGCGTGCAGCGCGGCTCTATCCCTGTG GTGGACTCAAGCACGTCCGTCTCCAATAACGACCGCATTTCGGCCAATGGTGGCTTCCGTCAGACCGTAGTCAAACGGCCTGCCCAAGCTGCAACCCAGG CAATTCCCCAGGATTCCGGCGTCGTGGTGATGGTGCCCGGCAGTGGGGCTGCAACCTCGGCGCCTATCAGTGCCGAACCATGGACCCCAGGCCCGAGCAC TTCCGGGCCGGTGAACTCCACGCCGATTCAAACCGCGCCGGTCAACCAGGGCACCTACTACATGCCTTCTACGCCGAGCGGTATTCCGTCATCGTCCAAT GCGGGCGGGTTGTCGGCTGACGAACAACTCGATGGCCCGGTGCTGGCGTTGCTCACAACCGCACAGCAGCAGCAGGCGGGTGGCGATTTGAATGGCGCCT
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| Amino Acid Sequence |
>penicillin-binding protein 1B
MIKLGLVGLVAVAGLAVYLDAVVQEKFSGKRWTIPAKVYARPLELFSGQKLSKEDFLTELDALGYRREPVSNGPGAAAVSGNTVDLNTRGFQFYEGLEKA QPVRVRFSGDYVAELSSLNGSKLPVVRLEPLLIGGIYPKNLEDRILIKLDQVPPYLLETLVAVEDRDFYSHWGVSPKSIARAIWVNTSGGKMTQGGSTLT QQLVKNFYLTNERSLTRKLTEAMMAMLLELHYSKQEILEAYLNEVFVGQDGQRAVHGFGLASQFFFGQPLSELKLHQVALLVGMVKGPSYYNPRRNPERA LERRNLVLDVLEQQGVATAEQVAAAKKMPLGVTTRGKLADSSFPGFIDLVKRQLREDYRDEDLTEEGLRIFTSFDPILQMKAEASVNDTFKRLTGRKGSD EVEAAMVVTNPETGEVQAMIGSRQASFAGFNRALDAVRPIGSLVKPAVYLTALEKPSKYTLTSWLSDDPLSIKGADGQVWTPKNFDRRSHGTVFLYQGLA HSYNISTSRLGLEVGVPNVLKTLARLGIEREFPAFPSMLLGAAAMTPMEVTTMYQTLANGGFNTPMRGIRSVLTADGEPLKRYPFQIQQRFDAGSIYLIQ NAMQRVMREGTGRSVYSVLPSNLTLAGKTGTSNDSRDSWFAGFGQDVLAVVWLGRDDNGKTPFTGATGALQVWTSFMRKADPLPLNMPQPDNIVQAWIDP HTGQGSDANCPGAVQMPYIRGSEPPPGAACSGSAPADADSVMDWVKGWMN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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