Pseudomonas sp. CFT9, CFT9_10051
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFT9 soap_scaffs_T9.Contig37, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCAAGGAACGTATCAATATTACCTTCAAACCCGCGGTCGGTAGCGCTCAGGAAGATGTCGAACTGCCGTTGAAGCTGCTGGTGCTGGGGGATTTTTCCCA GCGCGCGGACCCACGCAAACTCGAAGATCGCAAGCCCATCGGTATCGACAAGCACACCTTTGACGAGGTGTTGGCCAAGCAAGCATTGAGCCTGACGCTG AGCGTTCCCAACCGCCTCCAGGATGCAGCCGACGTGGAAGAACTGCCGGTTCAGGTGCGAATTAACACCATGAAGGACTTCAACCCCGCGAACCTGGTGG AGCAGATCCCGCAATTGCAAAAGTTGATGGCATTGCGTGAGGCATTAGTGGCGCTCAAGGGACCGCTGGGCAATACGCCCAGCTTTCGCAACGCTATCGA GCGGGCGTTGGCCAATGGTGACTCTCGCGCACGAGTGCTCGCCGAACTGGGCCTGGATAGGCCTCAAGCCTGACGTTTTCAGTAAAAGGACACTGACACC
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| DNA Sequence for Gene |
>CFT9_10051
ATGACCACCATTCAACACGGCACGCAACCCGTACAGGTTATCGAAAGCGGTAGCATCCTCGATAACATCATTTCCCAGACATTGCTCAGCGCCGACGACG AGGCTTATGGCATCGCCAAGCGCGGCGTGTCGGCGTTTATCGCAGAGCTGGTCAAGCCACATAATTGTGACGAACCCGTAAAGAAACGCCTGGTCGACCG GATGATCGCCGAGATCGACACCAAGCTCAGCGAACAAATGGATGAGATCCTTCACCATCCGGACTTCCAGGCGTTGGAGGCTTCGTGGCGAGGCTTGCAG TTGCTGGTCGATCGCACCAATTTTCGCGAGAACATCAAGATCGAACTGTTGAATGTTTCGCGCGAGGACCTGTTGGATGATTTCGAAGATTCCTCGGAAA TTACCCAGTCCGGGTTATACAAGCACGTCTATAGCGCCGAATACGGTCAGTTCGGCGGTCAGCCGGTGGGCGCGATCATTGCCAATTACTTTCTTTCGCC CAGTGCGCCCGATGTGAAACTGATGCAATACGCATCCAGCGTCGCCGGCATGGCCCACGCGCCCTTTATCGCTGCAGCGGGGCCAAGTTTCTTCGGCTTG GAAAGCTTCACCGGGTTGCCCGACCTGAAGGATCTGCGGGACCATTTCGAAGGCCCGCAGTTTGCCAAATGGCAAAGTTTCCGGCAGAGCGAAGACGCAC GATATATTGGCCTCACCGTGCCGCGCTTTTTGCTGCGCACCCCGTATGACCCCCTTGAGTGCCCGGTCAAGACCTTCGCCTACCAGGAGAACGTGGTTAA CAGCCACGAGCATTACTTGTGGGGCAATACCGCCTATGCCTTTGCCACTCGCCTGACCGACAGCTTCGCGCGCTTTCGCTGGTGCCCCAACATTATTGGC CCGCAAAGCGGCGGGGCGGTCGAAGACCTGCCGCTACATCACTTCCAGAGCATGGGCGAGATTGAAACCAAGATTCCTACGGAGGTGCTGATTTCGGACC GACGTGAGTACGAGCTGGCACAAGAAGGTTTCATCGCCTTGACCATGCGCAAGGGCAGCGATAACGCAGCGTTTTTTTCCGCCAGCTCCGTGCAGAAGCC CAAATCGTTCGGCATCAGTGAGGAGGGCAAGGCGGCAGAGCTGAATTACCGCTTGGGCACCCAATTGCCCTACATGATGGTGGTCAACCGCCTGGCTCAT TACCTCAAAGTGCTGCAACGGGAGCAGTTGGGCGCGTGGAAAGAGCGGACGGACCTGGAGTTGGAGCTCAACAAATGGGTTCGCCAATACGTGGCGGACC AGGAAAATCCCAGTGCCGAGGTGCGCGGGCGGCGCCCTTTGCGCGCTGCGCGCATTGTCGTCAGCGATGTCGAGGGCGAGCCTGGCTGGTACCGGGTCAA CGTTACGGTACGCCCGCATTTCAAATACATGGGGGCAGACTTCACGTTGTCCCTGGTCGGGAAGCTCGATAAAGAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAGAAGCCAGGGCATGCTTGAGCACAACAGCCTTTTCGAACGCCTCGAGCAGGGGGCGTCTAACCCGGGTGCCACCGTGGCGTCCATCGCCGCACATTT GGGGAAAATGCTCAGCACTCGTGCGGGCAGTGTCCAGACGCTGCCTGATTATGGCTTGCCTGACCTCAATGACATGCGGCTCAGCTTGCATGAGTCCTTG AGCCAGTCGCGGCTGCATATCGAACGTTTTATCCAGGCCTATGAGCCGCGGCTGACGAACGTACGTGTCAGGCTGTTGCCGGTTGTGCGTGACTCCTTGT CCCTGGCATTCGCCATTGAGGCTGAGCGGATGATTGCGGGCGTACTGCATCCTGTAGTGTTCCACGCGCGCCTCACGGATACCGGGCGGGTTGAGGTCTG TGCCAATGACGCTTAACCGTTATTTTCAAAGCGAACTCAGTGCGTTGCGCCAACTGGGGCGACGTTTTTCCGAACGTAATCCCGCCCTGGCGCCGTTTCT
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| Amino Acid Sequence |
>type VI secretion protein
MTTIQHGTQPVQVIESGSILDNIISQTLLSADDEAYGIAKRGVSAFIAELVKPHNCDEPVKKRLVDRMIAEIDTKLSEQMDEILHHPDFQALEASWRGLQ LLVDRTNFRENIKIELLNVSREDLLDDFEDSSEITQSGLYKHVYSAEYGQFGGQPVGAIIANYFLSPSAPDVKLMQYASSVAGMAHAPFIAAAGPSFFGL ESFTGLPDLKDLRDHFEGPQFAKWQSFRQSEDARYIGLTVPRFLLRTPYDPLECPVKTFAYQENVVNSHEHYLWGNTAYAFATRLTDSFARFRWCPNIIG PQSGGAVEDLPLHHFQSMGEIETKIPTEVLISDRREYELAQEGFIALTMRKGSDNAAFFSASSVQKPKSFGISEEGKAAELNYRLGTQLPYMMVVNRLAH YLKVLQREQLGAWKERTDLELELNKWVRQYVADQENPSAEVRGRRPLRAARIVVSDVEGEPGWYRVNVTVRPHFKYMGADFTLSLVGKLDKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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