Pseudomonas sp. CFII64, CFII64_29019
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFII64 soap_scaffs_II64_half.Contig57, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGCGGATCAACCCCGCGCCGAACTGCTGCTGGGCAAGCTGTACTACGAAGGCAAATGGGTGCCGGCCGATTCGAAAAAAGCCGAAGAGCATCTGAAGA AAGCCGCAGGCACGGAAATCGCCGCGCATTACTACCTGGGGCAGATCTATCGTCGGGGCTACCTCGGCCAGGTCTATCCACAGAAGGCAGTGGACGAACT GCTGATCGCCGCTCGTGGCGGTCAGAACAGTGCCGACTACGCCATTGCCCAGCTCTACTCCCAAGGCAAGGGCACGATTCCCAACCCGGTCAATGCCTGG GTCTTCAGCCAATTGGCGCTGAAGCAAGGCACGCCGCAAGCCACCGATCTGGCGCAGCAACTGAGCGCCGCACTACCGCCTGAAAAGCTCGCCGCAGCCC AACGGTTGCTGGAACAAGAGCAAAAAGTCCGGGGCGCCAGCAGCCAGAACGCGCTGGCCATGCAAGCCCTGCAAAAAGAAGACGGCGAGGACGCACCCCT
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| DNA Sequence for Gene |
>CFII64_29019
ATGAAACTGAATTCCCTGATGGCTGCCGGCATGGGCCTGGGCTTTACGCTGATGTGGGCGACGCCGACATTGGCCGCGATGACTGAAGACAAGAACTTTG GTCTGGAAGTGAAAATCACCGGCCAGGCCGAAGACGACCGCGACCTGGGCACCCGCTCCGGCGGCGACGTCAACGGTATCGGTCTGGACGTGCGTCCATG GATTTACGGCGAGCGCGGTAACTTCAGCGGCTATGCCATGGGCCAGGTGGTGACCGCCACCGACACCATCCAGACTGACCCGCTGGAACAAGCCACCAGC GATGGCAGCGGCACCCAGACCGCGCGCGGCAATGCCAGCGAGCGGGAAGTCGACAAGAGCTATCTGGCCTTGCGCGAATTCTGGATCGGTTACAGCGGTT TCACCCCGTACCCTGGCGAAATGCTGAAGGTCGGTCGTCAGCGCCTGCGCAACGACGACGGCCAATGGCATGACGTGAACATCGAAGCGGTAAATTGGGC GTTCGACACCACGCTGTTGCGTGCCGATGTCGGCGCTGCCCAGCGCTTCAGCGAATACCGCACTGACCTGACCGAGCTGGACCCGAAAGACAAAGACCGT CAGCACCTGTTCGGCGACGTCGCCTACCAGTGGTCCCCTGGCCATTGGGCCGGCGTGCGCGCCCATCACAGCCACGACGGCGGCAGCCTCAAGGACCGCG GTGAGGTGGTGGACGATCTGGACAAGACTTCCCGGGGCGATCTGACCTGGCTGGGTCTGCAGGCCAACAGCGACGCTTACAACTATCGCAACACCAACCC GATCAACTATTGGGGCAGCCTGACTTACCTGACCGGCGATCGTGACGAAACCCCGACCACCTTCAGCTCGGCCACCGATCAATACCTGGCGGGCGACAAG ACCAGCAGCAACGTCAACGGCTGGGCGACCGATCTGGGCCTGCGTTTCCGTCTGGACCCGCAATGGCAAGTCGGCGCCGCGTACTCGCGGGCCAGCAAGA ATTACGAACAGAACGGCCTGGAAAGTAACCGATCGAACTGGACCGGCACCCGCTCGCGTGTGCATCGCTTCGGCGAAGCGTTCCAGGGCGAAATGGCCAA CGTGGAAACCGGCTCGCTGTTCGCTTCCTGGCAGCTGCGTGACGACTACGACGCGTCGCTGATTTACCACAAGTTTCGTCGTGTCGATGGCAATGCCCGT ATCGGCGGCGCTGGCGTGAACCCCAATCGCGAGAACTTCGACGAAAACGGCATCTCGACCAACACCTTCGATTCGTTGCCACTGGAAGACGGTCGCAAGG ATCTGGGTCAGGAAATGGACCTGGTCGTGACCAAGTACTTCAAGCAAGGCCTGTTGCCGGCGGCGTTGAGCCAGTCGATGGACGAGCCTTCGGCGCTGGT GCGCCTGCGCGCCGGTGTCTTCAAGCCGGGCGACGCTTATCACAGTGGCGTGGATGAATACATGCACCGCGCCATCGTCGACGTTATCTGGCGCTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCGAGCCGCGAAAGGAGTGCGAGAGATGAACAGTCAAGCAAGCAACTTGCGAACCCGGGCCTGGCCACAAGCCCTGCTGGAAAGCGCAGTGCTGAGCAG CGCGCTGTTGCTCGGCAGCACGATGGCACTGGCTAACAGTGCGCCGGCTGCGACCGCTCCCGCCAAGGTCGGAGTCGTTAAAGAGTTGCAACAGGCCAAG ACCTACACCATCAGCAGCCCGCCCGTCGAGCCGCTGATGATGGACAAGCCCAAGCTGCCGGACCTGACCGGCTACACCGCCGAAGCCGCTGCGAAAAAAA TCGTGCGCGGCAAGCCGGCGAAAGTCCGCATGGGCCGGATGATGGCGGAAAACGGCCTGAAGGAATTCATCGGTGGCGATAACAAGATGGCCGAATGGGT TGCCCGCCAACGCGGCATCCCCCAGGCCATCGTTGTTGAAGACGGTTATGCCACCCTGAAAGACCTGGCGAAAAAAGTACCCAAGCAGTACCTGAACGAA
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| Amino Acid Sequence |
>alginate biosynthesis protein AlgE
MKLNSLMAAGMGLGFTLMWATPTLAAMTEDKNFGLEVKITGQAEDDRDLGTRSGGDVNGIGLDVRPWIYGERGNFSGYAMGQVVTATDTIQTDPLEQATS DGSGTQTARGNASEREVDKSYLALREFWIGYSGFTPYPGEMLKVGRQRLRNDDGQWHDVNIEAVNWAFDTTLLRADVGAAQRFSEYRTDLTELDPKDKDR QHLFGDVAYQWSPGHWAGVRAHHSHDGGSLKDRGEVVDDLDKTSRGDLTWLGLQANSDAYNYRNTNPINYWGSLTYLTGDRDETPTTFSSATDQYLAGDK TSSNVNGWATDLGLRFRLDPQWQVGAAYSRASKNYEQNGLESNRSNWTGTRSRVHRFGEAFQGEMANVETGSLFASWQLRDDYDASLIYHKFRRVDGNAR IGGAGVNPNRENFDENGISTNTFDSLPLEDGRKDLGQEMDLVVTKYFKQGLLPAALSQSMDEPSALVRLRAGVFKPGDAYHSGVDEYMHRAIVDVIWRF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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