Pseudomonas sp. CFII64, CFII64_25264 (motB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFII64 soap_scaffs_II64_half.Contig52, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGGATGACGGCGTACATCTGTGATTACCTGCGCATCATGTCCTCGGGCAACATGGCTCCCCACGAGCTGGAAGGCCTGTTCGACATGGAACTGCAAAG CATCAAGGAAGAACTCGGGCATCCCTCCCACGCCATTACCGGCATCGCGGACGGCATGCCCGGTTTCGGTATCGTCGCGGCGGTACTCGGTATCGTGGTG ACCATGGCCTCCCTGGGCGACGGCGACAAGGCTGCCATCGGTAACCACGTCGGCGCGGCACTGGTCGGTACGTTCTTCGGTATTCTCGCGGCCTACGGCT TTTTCGGCCCGCTGGCCACGTCCCTGGCCCACGATGCCAAGGAAGAGCTGAATGTCTATGAAGCCATCAAGGCATCGCTGGTGGCTTCGGCGTCCGGCAT GCCGCCATCGCTGGCCGTAGAATTTGGCCGCAAGGTTTTGTATCCCGCGCATCGGCCCAGCTTCAGTGAGCTGGAGCAAGCGGTTCGCGGTCGCTAAGCC
|
|
| DNA Sequence for Gene |
>CFII64_25264
|motB
ATGGAAAATAATCAGCCGATAATCATCAAGCGCGTCAAGCGCTATGAAGGCGGACACCACGGCGGGGCATGGAAAATCGCCTTCGCCGACTTTGCTACGG CGATGATGGCGTTCTTCCTGGTGCTGTGGCTGATGTCGTCGGCCACGCCCGAGCAGTTGCTGGCCATTGCCGGCTACTTCAAGGACCCGGTGGGGTTTTC CGACAGCGGCTCGCCCTACGTGATCGACCTCGGCGGTTCGCCGGAAATGTCCCCGGACCAGACCCTGAACCCCGAGATCAAGTCCACGCCGACCCCGGAC AACGTACCTATCGAATCCGACTCGGCAGAAGCCAAGGCCGAAGCGGTCGAGCAGGAACGTCTGGAAATGCTTCTGCAAGAATTGCAGAACAAGGTCAACG AGAACCCGGAACTGCAGAAATTCAAGGATCAGATCCACTTCGAGATTACCCAGGACGGCCTGCGGATTCAGATCACCGATGCTGACAATCGGCCGATGTT CGATCTGGGCAGCGCGCGCCTCAAGCCGTATTTCGAAGACATCCTGCTGGCGATGGCCGACACCATCAAAGCGGTGCCGAACAAGATCAGCATCAGCGGT CACACCGACGCCAAGCCTTTCGTGGGTAACGGCGATTACGGCAACTGGGAGTTGTCGGCCAACCGGGCCAACGCGGCGCGTCGAGCGCTGATCGCGGGCA CCTATCCGGAAAGCCAGGTCGCCCGTGTCGTGGGGTATGCATCGTCTGCGCTGTATGACCGCACGCAGCCGTTCAACCCGGTGAACCGCCGGATCGACAT CGTGGTAATGACCAAAAAGGCACAGCAACGTATCGAAGGCACTCACGGCGTGGGCGATGGCAATACCCCTCCAAAACCGGCCACGCCCGCAACACCGCCC GGCGCGTCGAATACGAAGCCGCCTGATCCGCAGGCCTACGCCCAGCCTCATGAGCTTCGGCAAAAGCTGAATATCTTCGAGGATGGCACGCTGAAGATGG ACGAGACGAAGAACTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CAAACAAAAAGCCCGGATTCAAACGAATCCGGGCTTTTTTTTCTTCACGCCGTAGGAGGGGAATTGTCCCGAAGACGCTGGTGCAAGCGCTGAGGATATT CCGGCTCAGACCCGACGCCTTCCCGGACAAGTCCGGTCCTACCTGATTTTTTGCACGCCCCGTAGGAGGGGACTTGTCCCCGAATACGCCGGTGCAAGCG CTGAAGATATTCCTTGGCGCTCCCGACGTTTTCCCGAACAAGTCCGGTTCTACCGAGCAACACAGAATCAGGTAGGAGGGAATTTATCCCCGAATAGGCA TTATGGTCGCAGGATAATTATCTGCTGCACCGACGCCATCGGGGACAAGTCCCCTCCTACAATGGTCGCGCCTACCCAATCAATAACTGTTTTCCGGCAA GCTGGCGATGATCGAGCGATAGCTGTTCATGCGTTGCTGCTGCACGCGGCCTTCTTCCAGGGCGATGATCAATGCACAGCCCGGCTCGCGGTCGTGTTTG
|
|
| Amino Acid Sequence |
>flagellar motor protein MotB
MENNQPIIIKRVKRYEGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAIAGYFKDPVGFSDSGSPYVIDLGGSPEMSPDQTLNPEIKSTPTPD NVPIESDSAEAKAEAVEQERLEMLLQELQNKVNENPELQKFKDQIHFEITQDGLRIQITDADNRPMFDLGSARLKPYFEDILLAMADTIKAVPNKISISG HTDAKPFVGNGDYGNWELSANRANAARRALIAGTYPESQVARVVGYASSALYDRTQPFNPVNRRIDIVVMTKKAQQRIEGTHGVGDGNTPPKPATPATPP GASNTKPPDPQAYAQPHELRQKLNIFEDGTLKMDETKN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|