Pseudomonas sp. CFII64, CFII64_20383
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFII64 soap_scaffs_II64_half.Contig45, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGATGCCGACGCGATTCTCTTGCTGCAATGGGTGGGTGTGCATCTGCCCGAACATTACCCGCGCCTGGAACAGATGCTCCGTGCCTGGGGCGGCAATGCC TCCGGCAGCGGCATCGCCAACATTGATAACACCGGCGAAGTACACCCGGACACCTACTGGTGGCAGCACTCGGTGGGCAATGTCCGGCACACGCCGTTTC GCACACTCTGGCTGGATCAGCCAGACGCCCTGCTGTTACGCCTGCGTGAGCATCCCCGCGCCATTGGCGGTCGCTGCACGCACTGCCGCTGGCTGCACAT CTGCAATGGCAATACCCGCACGCGCGCCTGGGCCGAAGGTGATCTCTGGGGCCACGACCCCGGCTGCCACCTCAGCGATGAGGAAATCGGTGCGCCGCCC ATAACAACCATCGCCTGCGTCGCACACTGAGTCGCCCGTCCGGCAAACCAGCTGACAAAGGCTGGGGCCGGTCAACCTGATGAAGCACCAAGGACGTACC
|
|
| DNA Sequence for Gene |
>CFII64_20383
ATGTCTCCATCGACCGCTATACCGGCCACACTTGAGTCCCCGTTCAGACCGGGCGAAGTCGCTCTGGTAGGCGCAGGCCCCGGCGATCCCCGCCTGCTGA CCCTGCGCGCCTGGAGCCTGTTGATGCAGGCCGACGCGGTGGTCTACGACCGCCTGATCAGCCCTGAACTGCTGACCTTGATCCCCCTCACCTGCGCCCG GCATTACGTCGGCAAGGCCAGCGGTTACCACAGCCTGCCCCAGGACAGAATCAACCAATTGCTCGCTGACCTCGCCGATCAAGGGCTGCGTGTGGTTCGC CTGAAGGGCGGCGACCCGTTCATTTTTGGTCGCGGCGCCGAGGAGCTGGAATATCTGCTGCAGCGTAACGTTGACTGCCAGGTGGTCCCCGGCATCACCG CTGCATCCGGCTGCAGCGCTTACGCCGGTATCCCGCTGACCCACCGGGATCTGGTCAACTCCTGCCGATTCATCACCGGCCACTTGCAACATGACGGCGA ATTGAAACTGCCTTGGGGCGACCTGACCGACAGCAACCAGACGCTGGTGTTTTACATGGGCTTGTCCAATCTGGACATTATCGCCCGGCGCTTGATCGAA GCCGGGCTGGCGGCTGACACACCGGTCGCGCTGATCAGCAACGGCACCCGGCCCGACCAGCATGTGGTCCGTGGCTTGCTGCACCAACTGCCGGGCCTGG CGCTGGATTGCCCGTCGGGTACGCCGACGCTGACGGTGATCGGCCAAGTGGTCAATCTATTCGCCGCACAGAAAATGGACTATCCCGCACGGTTTTATCC CGTTGCAGCACTGCAACCGCGCGGCAAGGTGATGTCATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AACGCCGGATGCTGGTCTCGCTGCTTTGGCTCGGATCGGCCCATGTCGGCGCAGCGATTGCGGCCACCGATACGGCCCTTGAACAGGCCGCCGGCAGCTA CCAGACGCATTGCCAGAGCTGCCACGGCACCAATCGTTTCGGCGGCACGGGGCCAGCGTTGCTGCCCGAAAGCCTGAGCCGGATCAAACCCGACGAAATC CGCAACGTGATCCGCAACGGTCGCACCGCGAGCCAGATGGCCGGATATGCCAAGGCGCTCAATCCGGCACAGATTGATGCACTGGCGAACTACCTTCAGC AACCACCTGCTTCCCTGCCCAGTTGGGACAACGACGACATTCGTCGCAGTCACACGATACTTGCCGATCTCGGCAAATTGCCCGACACACCCCAGCATGA CGCCGATCCACTGAACCTGTTCGTGGTGGTGGAATCCGGGGATCACCACCTCGACATCCTCGACGGTGATCGTTTCGAGGTGCTGGCGCGGTTCACTACC
|
|
| Amino Acid Sequence |
>uroporphyrinogen-III C-methyltransferase
MSPSTAIPATLESPFRPGEVALVGAGPGDPRLLTLRAWSLLMQADAVVYDRLISPELLTLIPLTCARHYVGKASGYHSLPQDRINQLLADLADQGLRVVR LKGGDPFIFGRGAEELEYLLQRNVDCQVVPGITAASGCSAYAGIPLTHRDLVNSCRFITGHLQHDGELKLPWGDLTDSNQTLVFYMGLSNLDIIARRLIE AGLAADTPVALISNGTRPDQHVVRGLLHQLPGLALDCPSGTPTLTVIGQVVNLFAAQKMDYPARFYPVAALQPRGKVMS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|