Pseudomonas sp. CFII64, CFII64_20078
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFII64 soap_scaffs_II64_half.Contig45, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCGCAACAGCAGCGGATCATCGAACAGATCCCTCAGCCGCGCCAACGCCGCGCTCACCGCCGGCTGCCCCATGAACAGCTTTTCCGCGACCCGGGTCAG GTTGCGCTCGAACATCAAGGCTTCAAAGATCACCAGCAAGTTGAGGTCGACACGGCGCAGGTCGTTGCGATTCATGAGTGGGGTCCAGAACGAAGAAAAT GAAAAGGCAGCCGGGCTTATCTGCTGCTCAAGTAAGCACTGTAGATGGGGGCCTGCCTTGTATGGATGTGCTTTTGATTCGCAAAAATACACCGTGATCT GTAGGACCGGCTTTAGCCGGGAGAGCGTCCTCCCGGCTAAAGCCGGTCCTACAGAATGATGTGGCGAGCCTTCAGCTCTAGCACCCGCAGACAATTTTGC GCACAGCCCGTCAATTCATGCCAGCCCGTTCCTGTCAGATTGACCCGCGCTTGCCGGACATTCGGTTCAGCGTAGTCGCTTCACTCAAAAGGGCATGAAT
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| DNA Sequence for Gene |
>CFII64_20078
ATGCGCAACCGATTTACCCTGCTGACTTCCGTGGCGCTGCTGGCGTCGGGTCAGGCCTTGGCTGTCCATGCCGAAGAGCCACATGGCTTTGTTGAGGATT CGACCCTCAATCTGTTATCGCGAAACTTCTTCCTGCACAACGATTACCGCACCGGACATGAGCAGAAGAACTACAAGCAGGAGTGGGCACAAGGCTTTAT TGCCAATCTCAAATCCGGCTTTACCCAGGGCGAGATTGGCGTTGGCATTGATGCCCACGGGTTTTATGGTTTGAAGCTGGACAGCGGCCGCGGGCGTTCC GGCACCGGGTTGCTGCCACTGGACAGCCAGGGCCGCGCCGAAGATGACTATTCCAGCGCGGGCGCTGCGCTCAAGCTCAAGTATTCGCAAACCACGTTGA AGTTCGGCGAAATGGAAGTCGAAACACCAGTTTTCGATACCGCCGACAAGCGCTTGCAACCGGAGTACGCCACCGGATTCTTCCTCGACAGCCAGGAAAT CCAGGGCGTAAGGCTGGTGGCCGGGCACTTCACGGCATTCAAGAATCAGGACGCCTCGACCACTCACGGCGACTTCGCCGGTTACGGCGCAAGCACGCGC GACGCCAGCATCAGCCTGGCCGGGATCGAACTCTCGGGCGATGGTCCTCTGGGAGGTTCGCTGTATGCCTCGCAACTCTCGGACACCTGGCGGCAGTACT ACGCCAACCTGCACTTTAACCGACAGCTGTCCGCAGACAGCTCGGTGCTGCTGGACAGTAATCTGTACCGAACGCTGGACACCGGCAACGCCGACGCCGA CGCCGGCTCGATCAACAATACAGCGTACAGTTTGTCGGCCAAATATCGGCTGGGCAGTCAGGCGCTGACCCTCGGTTATCAGAAGATTGACGGCGACACG CCATTCGATTTCGTCGGCGGCGATTCGATTTATCTGGCCAACTCGATCAAATATGCCGACTTCAACGGCGCGCATGAGCAGTCTTATCAGGTTCGCTACG ACCTGAACTTCGCAACGCTCGGTGTCCCGGGCCTCAAGTTCATGACCCGCTATGTGACCGGTCGGCAGATCGACGGGACCAAGGCCCAGCAAAGCGGCGC CTATAATCCGTTCGACACTGACATTGACCGTTACGTGCCGATTCAGGGCAAGGGCGGCCGCCATTGGGAACGCGATATCGACCTGAAATACGTGGTGCAA TCGGGCCCCGCCAAAGACCTGTCGCTGGATATTTCCCATGTATCCCACCGAGGCAATACCGCTCAGGCGGGCGACGATATCGATCGGTTGTATCTGGTGG TTGAATACCCGCTGGACCTGCTCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAACTGGCGCGACGGCTGGCGACCGGCAGTGACCGGCGCCAGCTGAATGGGGTCAGGCCGATTACGCGGGTGAACACCCGGGTGAAGTGCGATTGATCG GCAAAGCCACAATCCAGGCTGATCCGGGAAATGGTCAGTTGCGTTTCAGTGAGCAGGTGCTTGGCCTTGTCCAGGCGCATCTGCAAGAACCAGTCGCGAG GCGAGACGCCGGTATTCTTCTTGAAAGCCCGGGAGAAATGACTGCGCGACAAGGAGCACTCGCCGGCGATCTGGGCGATGGACAGGCCGCGATCCATATG GCTGGCCATCATTTCCTTGGCGCGCCGCTCCTGCCAGGGCGACAAGGCTATTTTTTCGCAGGGCGCTTTTTCGGTTTGAAGTGCCTCGCAAGGCGCGGGC TTTTCAAAGTGCGTGGACAGATGCGAACACAGCACCAGCATGGCCCGATCCACTGAGTCTTCAACCTCCCCCTGCCGATTGCGCAGCGCTGGCAATAACG
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| Amino Acid Sequence |
>outer membrane porin
MRNRFTLLTSVALLASGQALAVHAEEPHGFVEDSTLNLLSRNFFLHNDYRTGHEQKNYKQEWAQGFIANLKSGFTQGEIGVGIDAHGFYGLKLDSGRGRS GTGLLPLDSQGRAEDDYSSAGAALKLKYSQTTLKFGEMEVETPVFDTADKRLQPEYATGFFLDSQEIQGVRLVAGHFTAFKNQDASTTHGDFAGYGASTR DASISLAGIELSGDGPLGGSLYASQLSDTWRQYYANLHFNRQLSADSSVLLDSNLYRTLDTGNADADAGSINNTAYSLSAKYRLGSQALTLGYQKIDGDT PFDFVGGDSIYLANSIKYADFNGAHEQSYQVRYDLNFATLGVPGLKFMTRYVTGRQIDGTKAQQSGAYNPFDTDIDRYVPIQGKGGRHWERDIDLKYVVQ SGPAKDLSLDISHVSHRGNTAQAGDDIDRLYLVVEYPLDLLK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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