Pseudomonas sp. CFII64, CFII64_17116 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFII64 soap_scaffs_II64_half.Contig39, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGTCTTTGAACAAACCTTGAGCGAGCTGGTTGAGCTCGAAGGTTTGACCCTGAGCTACTACCGCGGATGGGATAAAGAAAAAGAGTTGAGCACGGTGCTC GCTTCTTCTCTCCATCGGGATCAGCAAATGGGCCATACACAGGCCGGACCACAACGCGCTGACTTGCGCCTTAGATTAGGCGCACACAACGCCGCGGATA TTTTGTCCCGGGGTCAGCAGAAGTTGGTGGTCTGTGCGCTGCGCATAGCCCAAGGACATCTCGTTAGCCAGGCTCGACGCGGCCAATGTATTTACCTGGT GGATGACTTGCCGTCGGAACTCGATGAGCGTCACCGCCAGGCACTTTGCCGTTTGCTGGAAGAATTACGCTGCCAGGTTTTCATTACCTGTGTAGACCAC GAATTATTGAGGGAAGGCTGGCAGACGGAAACGCCAGTCGCTTTGTTCCACGTGGAACAAGGCCGTATCACCCAGACCCACGACCATCGGGAGTGATTGC
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| DNA Sequence for Gene |
>CFII64_17116
|gyrB
ATGAGCGAAAACCAAACGTACGACTCCTCCAGCATTAAAGTGCTGAAAGGGCTAGATGCCGTACGCAAGCGTCCCGGTATGTACATCGGTGATACTGACG ATGGCAGCGGTCTACACCACATGGTGTTCGAGGTGGTTGATAACTCGATCGACGAAGCTTTGGCTGGCCATTGCGACGACATCAGCATCATCATCCACCC AGACGAATCGATTACCGTCCGTGACAACGGTCGCGGCATTCCGGTAGACGTGCATAAAGAAGAAGGCGTATCGGCAGCAGAGGTCATCATGACCGTGCTT CACGCTGGCGGTAAGTTCGATGACAACTCCTACAAAGTATCCGGCGGCCTGCACGGTGTAGGTGTTTCGGTTGTGAACGCCCTTTCCGAATTGTTGCTGC TGACTGTGCGTCGCAGCGGCAAGATCTGGGAACAGACCTACATCCATGGTGTTCCACAGGAACCCATGCGCATTGTTGGCGAGAGCGATTCCACCGGCAC CGAGATTCACTTCAAGCCATCGGCTGACACCTTCAAGAACATCCACTTCAGCTGGGACATTCTGGCCAAGCGGATTCGTGAACTGTCTTTCCTGAACTCC GGTGTGGGCATCGTCCTTAAAGACGAACGCAGCGGCAAGGAAGAGTTGTTCAAGTACGAAGGCGGTTTGCGTGCGTTCGTTGAATACCTGAACACCAACA AGACTCCGGTCAACCAGGTGTTCCACTTCAACATTCAGCGTGAAGATGGCATCGGCGTCGAGATCGCGTTGCAGTGGAACGACAGCTTCAACGAGAACCT GTTGTGCTTCACCAACAACATTCCTCAGCGCGATGGCGGTACTCACCTGGTGGGTTTCCGTTCTGCGCTGACGCGTAACCTGAACACCTACATCGAGCAG GAAGGTCTGGCCAAGAAGCACAAGGTCGCGACCACCGGTGACGATGCGCGTGAAGGTTTGACGGCAATTATTTCGGTAAAAGTGCCGGACCCGAAATTCA GTTCGCAGACCAAAGACAAGCTGGTTTCGTCCGAAGTGAAAACCGCAGTTGAACAGGAGATGGGTAAACACTTCTCCGACTTCCTGCTGGAAAATCCGAA CGAAGCCAAAGCCGTCGTCGGCAAGATGATCGACGCTGCGCGCGCTCGTGAAGCGGCGCGCAAGGCCCGTGAGATGACTCGCCGTAAAGGCGCGTTGGAC ATCGCAGGTTTGCCGGGCAAACTCGCTGACTGCCAAGAGAAAGACCCTGCCCTCTCCGAACTGTATCTGGTGGAAGGGGACTCTGCTGGCGGCTCAGCCA AGCAGGGGCGTAACCGTAAAACCCAGGCGATCCTGCCACTCAAAGGCAAGATCCTTAACGTCGAGAAAGCACGTTTCGACAAGATGATCTCTTCGCAAGA AGTGGGCACCTTGATCACTGCGCTCGGCTGCGGCATTGGTCGCGACGAATACAACATCGCCAAGTTGCGCTACCACAACATCATCATCATGACCGATGCT GACGTCGACGGTTCGCACATCCGCACCTTGTTGCTGACGTTCTTCTTCCGTCAGTTGCCTGAGCTGATCGAGCGTGGCTACATTTACATCGCTCAGCCGC CGCTGTACAAGGTCAAGAAAGGCAAGCAAGAGCAGTACATCAAAGACGACGAGGCCATGGAAGAGTACATGACCCAGTCGGCGCTTGAAGATGCCAGCCT GCACTTGAACGAGTCGGCTCCGGGTATTTCCGGTCCGCAGCTGGAGCGTCTGGTTAACGATTTCCGCATGGTCATGAAGACCCTCAAGCGCCTGTCGCGT CTGTATCCTCAGGAACTGACCGAGCATTTCGTTTACCTGCCGCCGGTCAGCCTGGAACAGCTTTCCGATCACGAAGGCATGCAAGCCTGGCTTGCCCTGC TCGACACACGTCTGCGCGTCGGCGAGAAGTCCGGTCTGGTTTACAAAGCCAGCCTGCGTGAAGATCGCGAACGTAACGTCTGGCTGCCAGAGGTCGAACT GATCTCCCACGGCTTGTCCAACTACGTGACCTTCAACCGTGACTTCTTCGGCAGCAACGATTACAAGACTGTGACCGCTTTGGGTCTGCAGATCAGTACG TTGCTGGAAGAAGGCGCTTACGTACAGCGTGGCGAACGCAAGAAGCCGGTCAGCGAGTTCAAGGAAGCCCTTGCCTGGTTGATGGCCGAAAGCACCAAGC GTCACACCATCCAGCGCTACAAAGGTCTGGGCGAAATGAACCCGGATCAGCTGTGGGAAACCACCATGGACCCGTCTGTACGTCGCATGCTCAAGGTCAC CATCGAAGACGCCATCGGCGCCGACCAGATCTTCAACACCCTGATGGGTGATGCGGTCGAGCCTCGTCGTGACTTCATCGAAAGCAATGCCCTGGCAGTG TCCAACCTCGATTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGGCTGCACCGCTAACCAAATCAGGCCAACGCTGATCCAGCGTTGGCCTTTTTTGTGGGCGGTGTGAAAGGCTGAACGGCGCCTGAATAATCACCAGGC CTGTGTGCCGTTCAGTTACGAGCGCCGTACACTTGCTCACCTGCTTTCACCTTTGGAACTCCTGATGCCTGCAAAGCCTGCGCCCAGCATTCTGAACACC GTCGAAGGTCAGCGGTTGACTGACGTTGATGCCGAGCGATGGCGCGAGTGGGGGCCTTATCTGAGCGAACGTCAGTGGGGTACGGTTCGTGAGGACTACA GCGCCGACGGCGATGCATGGAATTATTTCCCCCACGATCACGCGCGCAGTCGGGCGTATCGCTGGGGTGAAGACGGGCTTGCCGGATTCTCGGACAAGTC CCAGCACTGGTGCCTGGGACTTGGATTGTGGAATGAGCGTGACCCCATTCTGAAGGAGCGCTTGTTTGGGCTGAACAATGCTGAAGGCAATCATGGCGAG
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| Amino Acid Sequence |
>DNA gyrase subunit B
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMRIVGESDSTGTEIHFKPSADTFKNIHFSWDILAKRIRELSFLNS GVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYIEQ EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKHFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALD IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNIAKLRYHNIIIMTDA DVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLNESAPGISGPQLERLVNDFRMVMKTLKRLSR LYPQELTEHFVYLPPVSLEQLSDHEGMQAWLALLDTRLRVGEKSGLVYKASLREDRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQIST LLEEGAYVQRGERKKPVSEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGADQIFNTLMGDAVEPRRDFIESNALAV SNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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