Pseudomonas sp. CFII64, CFII64_16507
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFII64 soap_scaffs_II64_half.Contig38, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCGGTGGCCAGGGCGGCCCGCTGATGCACGTGATCGCCGCCAAGGCCGTGTGCTTCAAGGAAGCGATGGAGCCAGGCTTCAAGGTTTATCAGCAGCAAG TGATCGACAACGCTCAGGCGATGGCGCAAGTGTTCATCGACCGTGGCTTTGACGTGGTTTCCGGCGGCACCGACAACCACTTGTTCCTGGTCAGCCTGAT CCGTCAGGGCTTGACCGGTAAAGACGCCGACGCCGCTCTGGGTCGTGCGCACATTACCGTGAACAAGAATTCGGTCCCCAACGATCCACAATCACCGTTC GTGACCTCGGGCCTGCGTATCGGCACGCCGGCGGTCACCACGCGCGGCTTCAAAGTAACCCAGTGCGTCGAGCTGGCCGGCTGGATCTGCGACATCCTCG ACAACCTCGGCGACGCCGATGTCGAGGCCAACGTTGCCAGTCAGGTTGCGGCACTGTGTACCGATTTCCCGGTTTATCGCTGAGTCAGGAGTAGCCACTC
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| DNA Sequence for Gene |
>CFII64_16507
ATGCAGCATTACTCAGGCTTCGGCCTTTTCAAGCACTCCCTCAGCCATCATGAAAACTGGCAGCGCATGTGGCGCACGCCGACCCCGAAAAAAGTCTACG ACGTGGTTATCGTCGGTGGCGGCGGGCACGGTCTGGCCACGGCTTACTACCTGGCTAAAGTCCACGGCATCACCAACGTGGCCGTGGTCGAGAAAGGCTG GCTGGGCGGCGGTAACACGGCGCGCAACACCACCATCGTGCGTTCCAACTATCTGTGGGATGAATCGGCGCACCTGTACGAACACGCGATGAAACTGTGG GAAGGCCTGTCCCAGGACCTGAACTACAACGTGATGTTCTCCCAGCGCGGCGTTTACAACCTGTGCCACACCTTGCAGGACATGCGTGATTCCGAGCGTC GGGTCAGCGCCAACCGGCTCAATGGCGTGGACGGCGAATTGCTCAACGGCAAACAGGTCGCGGACGAAATCCCGTACCTGGACTGCTCGAAAAACACTCG CTACCCGATCATCGGCGCAACCGTGCAGCGGCGCGGCGGCGTAGCCCGTCACGACGCCGTGGCCTGGGGCTTTGCCCGCGCTGCCGATGCCTTGGGCGTG GACTTGATCCAGCAGACCGAAGTGATCGGCTTCCGCAAGGAAAACGGCGTGTGTGTCGGCGTGGAAACCAATAAAGGCTTCATCGGCGCCAAGCGCGTCG GCGTGGTCACGGCCGGTAACTCCGGGCACATGGCGAAACTGGCGGGCTTCCGTCTGCCGATCGAATCCCACCCGCTGCAAGCGCTGGTGTCCGAGCCGAT CAAACCGATTATCGACAGCGTGATCATGTCCAACGCCGTACACGGCTACATCAGCCAGTCCGACAAGGGCGACCTGGTGATCGGCGCCGGTATCGACGGC TACAACGGCTACGGCCAGCGCGGTTCGTACCCGGTGATCGAACACACCGTTCAGGCCATCGTCGAGATGTTCCCGGTGCTGTCCCGCGTGCGCATGAACC GGCAGTGGGGCGGCATCGTCGACACCACGCCGGACGCCTGCCCGATCATCTCCAAGACGCCGGTGCCGAACATGTTCTTCAACTGCGGTTGGGGCACCGG TGGCTTCAAGGCCACGCCGGGCTCGGGCAACGTGTTTGCCGCCAGCCTTGCCAAGGGTGAAATGCATCCGTTGGCCAAACCTTTTTCCATCGACCGTTTC CACAACGGCGCTCTTATTGACGAACACGGCGCAGCCGCGGTCGCCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGGAGAAATACCTATGCTGCACATCTTCTGTCCCCACTGTGGCGAGCTGCGCTCCGAAGAGGAATTCCACGCATCCGGTCAGGCGCACATTCCGCGTCC GCTGGATCCGGGCGCCTGCACCGACGAGCAATGGGGCGACTACATGTTCTTCCGCGATAACCCGCGCGGACTGCATCACGAACTGTGGATTCACGCCGCC GGTTGCCGCCAGTACTTCAACGCCACCCGCGACACCGTGACTTACGAAATTCTCGAAACCTACCCGATTGGCGCCAAGCCGCAGTTCACTAACAAGGCGT TTACGGCAGCCAGCGGCGAGGGAGACAAGGTATGAGCCAGACTAACCGACTGCCTAACGGCGGCCGCATCGACCGCAGCAAGGTGCTGAATTTCACCTTC AACGGCCAGACCTACCAAGGCTTCGACGGCGACACCCTGGCCGCTGCATTGCTGGCCAACGGCGTTGACGTGATCGGCCGCAGCTTTAAGTACTCGCGTC
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| Amino Acid Sequence |
>sarcosine oxidase, beta subunit family
MQHYSGFGLFKHSLSHHENWQRMWRTPTPKKVYDVVIVGGGGHGLATAYYLAKVHGITNVAVVEKGWLGGGNTARNTTIVRSNYLWDESAHLYEHAMKLW EGLSQDLNYNVMFSQRGVYNLCHTLQDMRDSERRVSANRLNGVDGELLNGKQVADEIPYLDCSKNTRYPIIGATVQRRGGVARHDAVAWGFARAADALGV DLIQQTEVIGFRKENGVCVGVETNKGFIGAKRVGVVTAGNSGHMAKLAGFRLPIESHPLQALVSEPIKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDG YNGYGQRGSYPVIEHTVQAIVEMFPVLSRVRMNRQWGGIVDTTPDACPIISKTPVPNMFFNCGWGTGGFKATPGSGNVFAASLAKGEMHPLAKPFSIDRF HNGALIDEHGAAAVAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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